SNP Profiles matching MO 9

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCTTTACCCTTCCCCAAGGCCAG
1._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
2._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
3._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
4._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
5._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
6._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
7._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
8._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
9._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
10._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
11._IMC_41___
CCGGCGCCTT__CCTTCCCCAAGGCCAG
12._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
13._PA_56_[PER]___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
15._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
16._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
17._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
18._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
19._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
20._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
21._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
22._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
23._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
24._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
25._PA_72_[PER]___
CTAGGGCTTTACCCTTCCCCAAGGCCAG
26._MARPER_42___
CCGGCGCC__ACCC__CC__AAGG__AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGCTCCGGGGAATTCCGGGTCTCC
1._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
2._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
3._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
4._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
5._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
6._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
7._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
8._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
9._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
10._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
11._IMC_41___
CTAAGGCTCCGGGGAATT__GGGTCCAA
12._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
13._PA_56_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
14._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
15._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
16._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
17._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
18._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
19._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
20._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
21._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
22._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
23._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
24._PA_72_[PER]___
CTAAGGCTCCGGGGAATTCCCGGTCTAC
25._PA_72_[PER]___
CTAAGGCTCCGG__AATTCCCGGTCTAC
26._MARPER_42___
CTAAGG__CC__GGAATT__GG__CCAA
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AAGGAACCAAACCCGTACAAGGX_XX_XX_X
1._MO_9___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
2._MO_9___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
3._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
4._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
5._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
6._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
7._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
8._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
9._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
10._MO_9___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
11._IMC_41___
AAGGAACCAAACCCGTACAAGGX_XX_XX_X
12._PA_56_[PER]___
AAGGAACCAGACCCGGCCAAGGX_XX_XX_X
13._PA_56_[PER]___
AAGGAACCAGACCCGGCCAAGGX_XX_XX_X
14._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
15._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
16._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
17._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
18._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
19._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
20._IMC_41___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
21._IMC_41___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
22._IMC_41___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
23._IMC_41___
AAGGAACCAAAACCGTACAAGGX_XX_XX_X
24._PA_72_[PER]___
AAGGAACCAGACCCGTACAAGGX_XX_XX_X
25._PA_72_[PER]___
AAGGAACCAGACCCGTACAAGGX_XX_XX_X
26._MARPER_42___
AAGG__CCAA____GT__AA__X_XX_XX_X

Input profile: MO_9

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

1._MO_9

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

2._MO_9 GC-05-119-3-21

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

4._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

5._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

6._MO_9

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

7._MO_9 GC-05-071-2-22

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._MO_9 GC-05-071-2-22

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._MO_9 GC-05-119-3-21

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._MO_9 GC-05-119-3-21

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._IMC_41

93.2 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

12._PA_56_[PER] RUQ_32

92.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._PA_56_[PER]

92.3 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

14._IMC_41

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

15._IMC_41

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

16._IMC_41

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016

17._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._IMC_41 GC-08-275-8-47

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

20._IMC_41

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

21._IMC_41

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

22._IMC_41 GC-08-275-8-47

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._IMC_41 GC-08-275-8-47

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._PA_72_[PER]

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

25._PA_72_[PER]

90.8 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

26._MARPER_42

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25