SNP Profiles matching LV 20 [POU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAGCGCTCTACCTGTCCCTATAGCCAG
1._LV_20_[POU]___
TTAGCGCTCTACCTGTCCCTATAGCCAG
2._LV_20_[POU]___
TTAGCGCTCTACCTGTCCCTATAGCCAG
3._LV_20_[POU]___
__AGCGCT______GT________CCAG
4._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
5._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
6._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
7._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
8._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
9._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
10._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
11._LV_20_[POU]___
TTAGCGCTCTAACTGTCCCTATAGCCAG
12._JA_5_/5_[POU]___
__AGCGCT______GT________CCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTATGGCTCTGGGTGGTTCCCGGTTTCC
1._LV_20_[POU]___
TTATGGCTCTGGGTGGTTCCCGGTTTCC
2._LV_20_[POU]___
TTATGGCTCTGGGTGGTTCCCGGTTTCC
3._LV_20_[POU]___
________TTGGGT__TTCCCGGTTTCC
4._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
5._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
6._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
7._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
8._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
9._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
10._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
11._LV_20_[POU]___
TTATGGCTCTGGGTAGTTCCCGGTTTCC
12._JA_5_/5_[POU]___
________TTGGGT__TTCCCGGTCTAC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGAACCAACCACCTGTCCTTCGX_XX_X
1._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
2._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
3._LV_20_[POU]___
AG__AACCAACCACCTGTCC____X_XX_X
4._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
5._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
6._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
7._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
8._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
9._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
10._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
11._LV_20_[POU]___
AGGGAACCAACCACCTGTCCTTCGX_XX_X
12._JA_5_/5_[POU]___
AG__ATCCAACCACCTGTCC____X_XX_X

Input profile: LV_20_[POU] RUQ_354

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._LV_20_[POU]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

2._LV_20_[POU]

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

3._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

5._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

6._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

7._LV_20_[POU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016

8._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

12._JA_5_/5_[POU] RUQ_1539

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25