SNP Profiles matching LV 20 [POU]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AG	CG	CT	CT	AC	CT	GT	CC	CT	AT	AG	CC	AG
1._RUQ_354	TT	AG	CG	CT	CT	AC	CT	GT	CC	CT	AT	AG	CC	AG
2._LV_20_[POU]	TT	AG	CG	CT	CT	AC	CT	GT	CC	CT	AT	AG	CC	AG
3._RUQ_354	__	AG	CG	CT	__	__	__	GT	__	__	__	__	CC	AG
4._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
5._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
6._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
7._LV_20_[POU]	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
8._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
9._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
10._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
11._GC-04-027-2-09	TT	AG	CG	CT	CT	AA	CT	GT	CC	CT	AT	AG	CC	AG
12._RUQ_1539	__	AG	CG	CT	__	__	__	GT	__	__	__	__	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AT	GG	CT	CT	GG	GT	GG	TT	CC	CG	GT	TT	CC
1._RUQ_354	TT	AT	GG	CT	CT	GG	GT	GG	TT	CC	CG	GT	TT	CC
2._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	GG	TT	CC	CG	GT	TT	CC
3._RUQ_354	__	__	__	__	TT	GG	GT	__	TT	CC	CG	GT	TT	CC
4._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
5._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
6._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
7._LV_20_[POU]	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
8._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
9._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
10._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
11._GC-04-027-2-09	TT	AT	GG	CT	CT	GG	GT	AG	TT	CC	CG	GT	TT	CC
12._RUQ_1539	__	__	__	__	TT	GG	GT	__	TT	CC	CG	GT	CT	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
1._RUQ_354	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
2._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
3._RUQ_354	AG	__	AA	CC	AA	CC	AC	CT	GT	CC	__	__	X_X	X_X
4._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
5._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
6._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
7._LV_20_[POU]	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
8._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
9._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
10._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
11._GC-04-027-2-09	AG	GG	AA	CC	AA	CC	AC	CT	GT	CC	TT	CG	X_X	X_X
12._RUQ_1539	AG	__	AT	CC	AA	CC	AC	CT	GT	CC	__	__	X_X	X_X

Input profile: LV_20_[POU]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 563

Dapeng Zhang, 2016

1._LV_20_[POU] RUQ_354

identical
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._LV_20_[POU]

identical
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper C 562

Dapeng Zhang, 2016

3._LV_20_[POU] RUQ_354

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 8 > FP

Dapeng Zhang, 2016

5._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 4 > FP

Dapeng Zhang, 2016

6._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 3

Dapeng Zhang, 2016

7._LV_20_[POU]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4209 1

Dapeng Zhang, 2016

8._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

9._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

10._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

11._LV_20_[POU] GC-04-027-2-09

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8 > FP3

12._JA_5_/5_[POU] RUQ_1539

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25