SNP Profiles matching JA 6 /2 [POU]

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 Key

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_Input profile
CCGGCCCTCTCTGTCTCCTTAACCAATT
1._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
2._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
3._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
4._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
5._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
6._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
7._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
8._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
9._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
10._GC-08-091-2-14
CCGGCCCTCTCTGTCTCCTTAACCAATT
11._GC-08-091-2-14
CCGGCCCTCTCTGTCTCCTTAACCAATT
12._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCTTAACCAATT
13._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCC_AACCAATT
14._JA_6_/2_[POU]
CCGGCCCTCTCTGTCTCCATAACCAATT
 1516171819202122232425262728
_Input profile
ATGGCTCTGGGGAACTCCCCGGCCAAAG
1._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
2._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
3._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
4._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
5._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
6._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
7._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
8._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
9._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
10._GC-08-091-2-14
ATGGCTCTGGGGAACTCCCCGGCCAAAG
11._GC-08-091-2-14
ATGGCTCTGGGGAACTCCCCGGCCAAAG
12._JA_6_/2_[POU]
ATGGCTCTGGGGAACTCCCCGGCCAAAG
13._JA_6_/2_[POU]
ATGGCTCTGG_AACTCCCCGGCCAAAG
14._JA_6_/2_[POU]
ATGGCTCTGGGGAGCTCCCCGGCCAAAG
 2930313233343536373839   
_Input profile
AGATCCAACCACCTGTCCATCGX_XX_XX_X
1._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
2._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
3._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
4._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
5._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
6._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
7._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
8._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
9._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
10._GC-08-091-2-14
AGATCCAACCACCTGTCCATCGX_XX_XX_X
11._GC-08-091-2-14
AGATCCAACCACCTGTCCATCGX_XX_XX_X
12._JA_6_/2_[POU]
AGATCCAACCAC_GTCCATCGX_XX_XX_X
13._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X
14._JA_6_/2_[POU]
AGATCCAACCACCTGTCCATCGX_XX_XX_X

Input profile: JA_6_/2_[POU]

 
Mars Center for Cocoa Science, Brazil
Location: 8214 11
 Dapeng Zhang, 2016

1._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 3 > FP
 Dapeng Zhang, 2016

2._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 2 > FP
 Dapeng Zhang, 2016

3._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 1 > FP
 Dapeng Zhang, 2016

4._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 13
 Dapeng Zhang, 2016

5._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 9
 Dapeng Zhang, 2016

6._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 7
 Dapeng Zhang, 2016

7._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 5
 Dapeng Zhang, 2016

8._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._JA_6_/2_[POU] GC-08-091-2-14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._JA_6_/2_[POU] GC-08-091-2-14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._JA_6_/2_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 10
 Dapeng Zhang, 2016

13._JA_6_/2_[POU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 15
 Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 364
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25