SNP Profiles matching IMC 41

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 Key

 1234567891011121314
_Input profile
CCGGCGCCTTACCCTTCCCCAAGGCCAG
1._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
2._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
3._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
4._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
5._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
6._IMC_41
CCGGCGCCTTACCCTTCCCCAAGGCCAG
7._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
8._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
9._GC-08-275-8-47
CCGGCGCCTTACCCTTCCCCAAGGCCAG
10._MARPER_42
CCGGCGCC-ACCC-CC-AAGG-AG
11._IMC_41
CCGGCGCCTT_CCTTCCCCAAGGCCAG
12._RUQ_1529
_GGCGCC___TT____CCAG
13._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
15._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
16._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
17._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
18._GC-05-071-2-22
CCGGCGCTTTACCCTTCCCCAAGGCCAG
19._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
20._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
21._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
22._GC-05-119-3-21
CCGGCGCTTTACCCTTCCCCAAGGCCAG
23._MO_9
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CTAAGGCTCCGGGGAATTACGGGTCCAA
1._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
2._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
3._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
4._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
5._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
6._IMC_41
CTAAGGCTCCGGGGAATTACGGGTCCAA
7._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
8._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
9._GC-08-275-8-47
CTAAGGCTCCGGGGAATTACGGGTCCAA
10._MARPER_42
CTAAGG-CC-GGAATT-GG-CCAA
11._IMC_41
CTAAGGCTCCGGGGAATT_GGGTCCAA
12._RUQ_1529
____CCGGGG_TTACGGGTCCAA
13._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
14._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
15._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
16._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
17._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
18._GC-05-071-2-22
CTAACGCTCCGGGGAATTCCGGGTCTCC
19._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
20._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
21._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
22._GC-05-119-3-21
CTAACGCTCCGGGGAATTCCGGGTCTCC
23._MO_9
CTAACGCTCCGGGGAATTCCGGGTCTCC
 293031323334353637383940  
_Input profile
AAGGAACCAACCAACCGTACAAGGX_XX_X
1._IMC_41
AAGGAACCAACCAACCGTACAAGGX_XX_X
2._GC-08-275-8-47
AAGGAACCAACCAACCGTACAAGGX_XX_X
3._GC-08-275-8-47
AAGGAACCAACCAACCGTACAAGGX_XX_X
4._IMC_41
AAGGAACCAACC_CCGTACAAGGX_XX_X
5._IMC_41
AAGGAACCAACC_CCGTACAAGGX_XX_X
6._IMC_41
AAGGAACCAACC_CCGTACAAGGX_XX_X
7._GC-08-275-8-47
AAGGAACCAACC_CCGTACAAGGX_XX_X
8._GC-08-275-8-47
AAGGAACCAACC_CCGTACAAGGX_XX_X
9._GC-08-275-8-47
AAGGAACCAACC_CCGTACAAGGX_XX_X
10._MARPER_42
AAGG-CCAA---GT-AA-X_XX_X
11._IMC_41
AAGGAACCAA_ACCCGTACAAGGX_XX_X
12._RUQ_1529
AA_AACCAACCACCCGTAC__X_XX_X
13._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
14._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
15._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
16._MO_9
AAGGAACCAACCAACCGTACAAGGX_XX_X
17._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
18._GC-05-071-2-22
AAGGAACCAACCAACCGTACAAGGX_XX_X
19._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
20._GC-05-119-3-21
AAGGAACCAACCAACCGTACAAGGX_XX_X
21._MO_9
AAGGAACCAACC_CCGTACAAGGX_XX_X
22._GC-05-119-3-21
AAGGAACCAACC_CCGTACAAGGX_XX_X
23._MO_9
AAGGAACCAA_ACCCGTACAAGGX_XX_X

Input profile: IMC_41

 
Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

1._IMC_41

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

2._IMC_41 GC-08-275-8-47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._IMC_41 GC-08-275-8-47

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

5._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

6._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._MARPER_42

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

11._IMC_41

98.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

12._MO_4 RUQ_1529

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

15._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

16._MO_9

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._MO_9 GC-05-071-2-22

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._MO_9 GC-05-071-2-22

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._MO_9 GC-05-119-3-21

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._MO_9 GC-05-119-3-21

92.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

21._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

22._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

23._MO_9

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25