SNP Profiles matching MO 9

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCGGCGCCTTACCCTTCCCCAAGGCCAG
1._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
2._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
3._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
4._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
5._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
6._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
7._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
8._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
9._IMC_41___
CCGGCGCCTTACCCTTCCCCAAGGCCAG
10._IMC_41___
CCGGCGCCTT__CCTTCCCCAAGGCCAG
11._MARPER_42___
CCGGCGCC__ACCC__CC__AAGG__AG
12._MO_4___
__GGCGCC______TT________CCAG
13._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
14._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
15._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
16._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
17._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
18._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
19._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
20._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
21._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
22._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
23._MO_9___
CCGGCGCTTTACCCTTCCCCAAGGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCTCCGGGGAATTACGGGTCCAA
1._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
2._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
3._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
4._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
5._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
6._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
7._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
8._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
9._IMC_41___
CTAAGGCTCCGGGGAATTACGGGTCCAA
10._IMC_41___
CTAAGGCTCCGGGGAATT__GGGTCCAA
11._MARPER_42___
CTAAGG__CC__GGAATT__GG__CCAA
12._MO_4___
________CCGGGG__TTACGGGTCCAA
13._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
14._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
15._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
16._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
17._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
18._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
19._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
20._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
21._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
22._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
23._MO_9___
CTAACGCTCCGGGGAATTCCGGGTCTCC
 29 30 31 32 33 34 35 36 37 38 39    
_Input profile
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
1._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
2._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
3._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
4._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
5._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
6._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
7._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
8._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
9._IMC_41___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
10._IMC_41___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X
11._MARPER_42___
AAGG__CCAA____GT__AA__X_XX_XX_X
12._MO_4___
AA__AACCAACCCCGTAC____X_XX_XX_X
13._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
14._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
15._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
16._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
17._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
18._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
19._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
20._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
21._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
22._MO_9___
AAGGAACCAACCCCGTACAAGGX_XX_XX_X
23._MO_9___
AAGGAACCAA__CCGTACAAGGX_XX_XX_X

Input profile: IMC_41

 
Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

1._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

2._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

3._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

4._IMC_41

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016

5._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._IMC_41 GC-08-275-8-47

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._IMC_41

identical
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

11._MARPER_42

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

12._MO_4 RUQ_1529

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

14._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

15._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

16._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

17._MO_9

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

18._MO_9 GC-05-071-2-22

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

19._MO_9 GC-05-071-2-22

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

22._MO_9 GC-05-119-3-21

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

23._MO_9

92.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25