SNP Profiles matching IMC 41

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 Key

 1234567891011121314
_Input profile
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
1._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
2._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
3._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
4._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
5._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
6._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
7._MARPER_42
CCGGCGCC-CC-CC-AAGG-AGCT
8._RUQ_1529
_GGCGCC__TT____CCAG_
9._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
10._IMC_41
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
11._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
12._GC-08-275-8-47
CCGGCGCCTTCCTTCCCCAAGGCCAGCT
13._MO_9
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
14._MO_9
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
15._GC-05-119-3-21
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
16._MO_9
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
17._MO_9
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
18._MO_9
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
19._MO_9
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
20._GC-05-071-2-22
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
21._GC-05-071-2-22
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
22._GC-05-119-3-21
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
23._GC-05-119-3-21
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
24._RUQ_32
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
25._PA_56_[PER]
CCGGCGCTTTCCTTCCCCAAGGCCAGCT
 1516171819202122232425262728
_Input profile
AAGGCTCCGGGGAATTGGGTCCAAAAGG
1._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
2._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
3._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
4._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
5._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
6._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
7._MARPER_42
AAGG-CC-GGAATTGG-CCAAAAGG
8._RUQ_1529
___CCGGGG_TTGGGTCCAAAA_
9._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
10._IMC_41
AAGGCTCCGGGGAATTGGGTCCAAAAGG
11._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
12._GC-08-275-8-47
AAGGCTCCGGGGAATTGGGTCCAAAAGG
13._MO_9
AACGCTCCGGGGAATTGGGTCTCCAAGG
14._MO_9
AACGCTCCGGGGAATTGGGTCTCCAAGG
15._GC-05-119-3-21
AACGCTCCGGGGAATTGGGTCTCCAAGG
16._MO_9
AACGCTCCGGGGAATTGGGTCTCCAAGG
17._MO_9
AACGCTCCGGGGAATTGGGTCTCCAAGG
18._MO_9
AACGCTCCGGGGAATTGGGTCTCCAAGG
19._MO_9
AACGCTCCGGGGAATTGGGTCTCCAAGG
20._GC-05-071-2-22
AACGCTCCGGGGAATTGGGTCTCCAAGG
21._GC-05-071-2-22
AACGCTCCGGGGAATTGGGTCTCCAAGG
22._GC-05-119-3-21
AACGCTCCGGGGAATTGGGTCTCCAAGG
23._GC-05-119-3-21
AACGCTCCGGGGAATTGGGTCTCCAAGG
24._RUQ_32
AAGGCTCCGGGGAATTCGGTCTACAAGG
25._PA_56_[PER]
AAGGCTCCGGGGAATTCGGTCTACAAGG
 293031323334353637     
_Input profile
AACCAAACCCGTACAAGGX_XX_XX_XX_XX_X
1._IMC_41
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
2._IMC_41
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
3._IMC_41
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
4._GC-08-275-8-47
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
5._GC-08-275-8-47
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
6._GC-08-275-8-47
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
7._MARPER_42
-CCAA--GT-AA-X_XX_XX_XX_XX_X
8._RUQ_1529
AACCAAACCCGTAC__X_XX_XX_XX_XX_X
9._IMC_41
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
10._IMC_41
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
11._GC-08-275-8-47
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
12._GC-08-275-8-47
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
13._MO_9
AACCAAACCCGTACAAGGX_XX_XX_XX_XX_X
14._MO_9
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
15._GC-05-119-3-21
AACCAA_CCGTACAAGGX_XX_XX_XX_XX_X
16._MO_9
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
17._MO_9
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
18._MO_9
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
19._MO_9
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
20._GC-05-071-2-22
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
21._GC-05-071-2-22
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
22._GC-05-119-3-21
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
23._GC-05-119-3-21
AACCAAAACCGTACAAGGX_XX_XX_XX_XX_X
24._RUQ_32
AACCAGACCCGGCCAAGGX_XX_XX_XX_XX_X
25._PA_56_[PER]
AACCAGACCCGGCCAAGGX_XX_XX_XX_XX_X

Input profile: IMC_41

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

1._IMC_41

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

2._IMC_41

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

3._IMC_41

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._IMC_41 GC-08-275-8-47

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_41 GC-08-275-8-47

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._IMC_41 GC-08-275-8-47

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._MARPER_42

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

8._MO_4 RUQ_1529

identical
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._IMC_41

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

10._IMC_41

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

11._IMC_41 GC-08-275-8-47

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._IMC_41 GC-08-275-8-47

98.6 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._MO_9

93.2 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

14._MO_9

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

15._MO_9 GC-05-119-3-21

93.1 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

16._MO_9

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

17._MO_9

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

18._MO_9

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

19._MO_9

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._MO_9 GC-05-071-2-22

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._MO_9 GC-05-071-2-22

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._MO_9 GC-05-119-3-21

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

23._MO_9 GC-05-119-3-21

91.9 %
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

24._PA_56_[PER] RUQ_32

90.5 %
37 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._PA_56_[PER]

90.5 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP577 24TcSNP560 25TcSNP534
26TcSNP529 27TcSNP469 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25