SNP Profiles matching ICS 43

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 Key

 1234567891011121314
_Input profile
CTAGGGCTTTAACCGTCTCTAACTAACT
1._ICS_43
CTAGGGCTTTAACCGTCTCTAACTAACT
2._RUQ_144
__AGGGCT______GT______CTAA__
3._CC_10
____GGCTTTAA__GTCTCTAACTAGCT
 1516171819202122232425262728
_Input profile
AAGGTTCCGGGTAGTTAACCTTTTCCAG
1._ICS_43
AAGGTTCCGGGTAGTTAACCTTTTCCAG
2._RUQ_144
______CCGGGT__TTAACCTTTTCCAG
3._CC_10
AAGGTTCCGGGTAGCT__CCTTCTCCAG
 2930313233343536373839   
_Input profile
AGAACTGGCGACCTGTACTTGGX_XX_XX_X
1._ICS_43
AGAACTGG__ACCTGTACTTGGX_XX_XX_X
2._RUQ_144
__AACTGGCGACCTGTAC____X_XX_XX_X
3._CC_10
GG__CTAG__AC__GTCCTTGGX_XX_XX_X

Input profile: ICS_43 RUQ_144

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._ICS_43

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._CC_10

90.6 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25