SNP Profiles matching ICS 43

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 Key

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_Input profile
CTAGGGCTTTAACCGTCTCTAAAACTAA
1._RUQ_144
CTAGGGCTTTAACCGTCTCTAA__CTAA
2._RUQ_144
__AGGGCT______GT________CTAA
3._CC_10
____GGCTTTAA__GTCTCTAAAACTAG
 1516171819202122232425262728
_Input profile
CTAAGGTTCCGGGTAGTTAACCTTTTCC
1._RUQ_144
CTAAGGTTCCGGGTAGTTAACCTTTTCC
2._RUQ_144
________CCGGGT__TTAACCTTTTCC
3._CC_10
CTAAGGTTCCGGGTAGCT__CCTTCTCC
 2930313233343536373839   
_Input profile
AGAGAACTGGACCTGTACTTGGX_XX_XX_X
1._RUQ_144
AGAGAACTGGACCTGTACTTGGX_XX_XX_X
2._RUQ_144
AG__AACTGGACCTGTAC____X_XX_XX_X
3._CC_10
AGGG__CTAGAC__GTCCTTGGX_XX_XX_X

Input profile: ICS_43

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

1._ICS_43 RUQ_144

identical
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_43 RUQ_144

identical
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._CC_10

90.9 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25