SNP Profiles matching ICS 1

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 Key

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_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._PA_70_[PER]
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._GC-04-053-3-17
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._MARPER_45
TTAAGGCT__AACC__CT__AAAA__AG
16._RUQ_847
TTAGGGCTTTAACCTTCTTTAAAATTAG
17._RUQ_847
__AAGGCT______TT________TTAG
18._RUQ_817
__AAGGCT______TT________TTAG
19._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
20._MARPER_34
TTAAGGTT__AACC__CT__AAAA__AG
21._MARPER_55
TTAAGGCT__AACC__CT__AAAA__AG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACTTTTCCAG
1._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
2._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
3._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
4._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
5._ICS_1
TTAAGGTTCCCGGTGGTTACTTTTCCAG
6._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
7._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
8._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
9._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
10._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
11._NA
TTAAGGTTCCCGGTGGTTACTTTTCCAG
12._PA_70_[PER]
TTAAGGTTCCCGGTGGTTACTTTTCCAG
13._GC-04-053-3-17
TTAAGGTTCCCGGTGGTTACTTTTCCAG
14._ICS_1
TTAAGGTTCC__GTGGTTACTTTTCC__
15._MARPER_45
TTAAGG__CC__GTGGTT____TTCCAG
16._RUQ_847
TTAAGGTTCCCGGTGGTTACTTTTCCAG
17._RUQ_847
________CCCGGT__TTAATTTTCCAG
18._RUQ_817
________CCCGGT__TTAATTTTCCAG
19._RUQ_847
TTAAGGTTCCCGGTGGCTACTTCTCCAG
20._MARPER_34
TTAAGG__CC__GTGGCT____CTCCAG
21._MARPER_55
TTAAGG__CC__GTGGCT____CTCCAG
 2930313233343536373839   
_Input profile
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
1._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
2._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
3._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
4._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
5._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
6._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
7._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
8._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
9._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
10._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
11._NA
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
12._PA_70_[PER]
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
13._GC-04-053-3-17
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
14._ICS_1
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
15._MARPER_45
GG__CTAG______GT__AT__X_XX_XX_X
16._RUQ_847
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
17._RUQ_847
__ATCTAGCGAACCGTAA____X_XX_XX_X
18._RUQ_817
__ATCTAGCGAACCGTAA____X_XX_XX_X
19._RUQ_847
GGATCTAGCGAACCGTAAATGGX_XX_XX_X
20._MARPER_34
GG__TTAG______GT__AA__X_XX_XX_X
21._MARPER_55
GG__CCAA______GG__AT__X_XX_XX_X

Input profile: ICS_1

 
Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

1._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

11._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

12._PA_70_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

14._ICS_1

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._MARPER_45

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._MARPER_34

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

21._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25