SNP Profiles matching ICS 1

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._MARPER_45___
TTAAGGCT__AACC__CT__AAAA__AG
16._ICS_1___
TTAGGGCTTTAACCTTCTTTAAAATTAG
17._ICS_1___
__AAGGCT______TT________TTAG
18._ICS_5___
__AAGGCT______TT________TTAG
19._ICS_1___
TTAGGGCTTTAACCTTCTCTAAAATTAG
20._MARPER_34___
TTAAGGTT__AACC__CT__AAAA__AG
21._MARPER_55___
TTAAGGCT__AACC__CT__AAAA__AG
22._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
23._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
24._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
25._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
3._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
4._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
5._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
6._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
7._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
8._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
9._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
10._PA_70_[PER]___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
11._PA_70_[PER]___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
12._ICS_1___
TTAAGGTTCCCGGTGGTTAC__TTTTCC
13._ICS_1___
TTAAGGTTCCCGGTGGTTAC__TTTTCC
14._ICS_1___
TTAAGGTTCC__GTGGTTACCCTTTTCC
15._MARPER_45___
TTAAGG__CC__GTGGTT__CC__TTCC
16._ICS_1___
TTAAGGTTCCCGGTGGTTACCCTTTTCC
17._ICS_1___
________CCCGGT__TTAACCTTTTCC
18._ICS_5___
________CCCGGT__TTAACCTTTTCC
19._ICS_1___
TTAAGGTTCCCGGTGGCTACCCTTCTCC
20._MARPER_34___
TTAAGG__CC__GTGGCT__CC__CTCC
21._MARPER_55___
TTAAGG__CC__GTGGCT__CC__CTCC
22._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
23._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
24._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
25._OC_61_[VEN]___
TTAAGGTTCCCGGGGGTTCCCCTTTTCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
3._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
4._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
5._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
6._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
7._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
8._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
9._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
10._PA_70_[PER]___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
11._PA_70_[PER]___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
12._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
13._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
14._ICS_1___
__GGATCTAGCGAACCGTAAATGGX_XX_X
15._MARPER_45___
AGGG__CTAG______GT__AT__X_XX_X
16._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
17._ICS_1___
AG__ATCTAGCGAACCGTAA____X_XX_X
18._ICS_5___
AG__ATCTAGCGAACCGTAA____X_XX_X
19._ICS_1___
AGGGATCTAGCGAACCGTAAATGGX_XX_X
20._MARPER_34___
AGGG__TTAG______GT__AA__X_XX_X
21._MARPER_55___
AGGG__CCAA______GG__AT__X_XX_X
22._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X
23._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X
24._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X
25._OC_61_[VEN]___
AAGGAACCAGCGAACCTTACTTGGX_XX_X

Input profile: ICS_1

 
Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

1._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

4._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

5._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._ICS_1 NA

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_70_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

11._PA_70_[PER] GC-04-053-3-17

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

12._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

13._ICS_1 NA

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._MARPER_45

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._MARPER_34

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

21._MARPER_55

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

22._OC_61_[VEN]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

23._OC_61_[VEN]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016

24._OC_61_[VEN] GC-05-039-1-39

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

25._OC_61_[VEN] GC-05-039-1-39

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25