SNP Profiles matching ICS 1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
1._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
2._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
3._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
4._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
5._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
6._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
7._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
8._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
9._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
10._PA_70_[PER]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
11._GC-04-053-3-17	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
12._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
13._NA	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
14._ICS_1	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
15._MARPER_45	TT	AA	GG	CT	__	AA	CC	__	CT	__	AA	AA	__	AG
16._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
17._RUQ_847	__	AA	GG	CT	__	__	__	TT	__	__	__	__	TT	AG
18._RUQ_817	__	AA	GG	CT	__	__	__	TT	__	__	__	__	TT	AG
19._RUQ_847	TT	AG	GG	CT	TT	AA	CC	TT	CT	CT	AA	AA	TT	AG
20._MARPER_34	TT	AA	GG	TT	__	AA	CC	__	CT	__	AA	AA	__	AG
21._MARPER_55	TT	AA	GG	CT	__	AA	CC	__	CT	__	AA	AA	__	AG
22._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
23._OC_61_[VEN]	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
24._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG
25._GC-05-039-1-39	TT	AA	GG	CT	TT	AA	CC	TT	CT	TT	AA	AA	TT	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
1._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
2._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
3._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
4._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
5._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
6._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
7._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
8._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
9._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
10._PA_70_[PER]	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
11._GC-04-053-3-17	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
12._ICS_1	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	__	TT	TT	CC
13._NA	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	__	TT	TT	CC
14._ICS_1	TT	AA	GG	TT	CC	__	GT	GG	TT	AC	CC	TT	TT	CC
15._MARPER_45	TT	AA	GG	__	CC	__	GT	GG	TT	__	CC	__	TT	CC
16._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	TT	AC	CC	TT	TT	CC
17._RUQ_847	__	__	__	__	CC	CG	GT	__	TT	AA	CC	TT	TT	CC
18._RUQ_817	__	__	__	__	CC	CG	GT	__	TT	AA	CC	TT	TT	CC
19._RUQ_847	TT	AA	GG	TT	CC	CG	GT	GG	CT	AC	CC	TT	CT	CC
20._MARPER_34	TT	AA	GG	__	CC	__	GT	GG	CT	__	CC	__	CT	CC
21._MARPER_55	TT	AA	GG	__	CC	__	GT	GG	CT	__	CC	__	CT	CC
22._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
23._OC_61_[VEN]	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
24._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC
25._GC-05-039-1-39	TT	AA	GG	TT	CC	CG	GG	GG	TT	CC	CC	TT	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
1._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
2._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
3._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
4._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
5._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
6._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
7._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
8._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
9._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
10._PA_70_[PER]	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
11._GC-04-053-3-17	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
12._ICS_1	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
13._NA	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
14._ICS_1	__	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
15._MARPER_45	AG	GG	__	CT	AG	__	__	__	GT	__	AT	__	X_X	X_X
16._RUQ_847	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
17._RUQ_847	AG	__	AT	CT	AG	CG	AA	CC	GT	AA	__	__	X_X	X_X
18._RUQ_817	AG	__	AT	CT	AG	CG	AA	CC	GT	AA	__	__	X_X	X_X
19._RUQ_847	AG	GG	AT	CT	AG	CG	AA	CC	GT	AA	AT	GG	X_X	X_X
20._MARPER_34	AG	GG	__	TT	AG	__	__	__	GT	__	AA	__	X_X	X_X
21._MARPER_55	AG	GG	__	CC	AA	__	__	__	GG	__	AT	__	X_X	X_X
22._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
23._OC_61_[VEN]	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
24._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X
25._GC-05-039-1-39	AA	GG	AA	CC	AG	CG	AA	CC	TT	AC	TT	GG	X_X	X_X

Input profile: ICS_1

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

1._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

2._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

3._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

4._ICS_1

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

5._ICS_1 NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

6._ICS_1 NA

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

7._ICS_1 NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._ICS_1 NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._ICS_1 NA

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._PA_70_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

11._PA_70_[PER] GC-04-053-3-17

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

12._ICS_1

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

13._ICS_1 NA

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

14._ICS_1

identical
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

15._MARPER_45

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

19._ICS_1 RUQ_847

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

20._MARPER_34

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 559

Dapeng Zhang, 2014

21._MARPER_55

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

22._OC_61_[VEN]

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5139 1 > FP

Dapeng Zhang, 2016

23._OC_61_[VEN]

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5139 2

Dapeng Zhang, 2016

24._OC_61_[VEN] GC-05-039-1-39

90 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

25._OC_61_[VEN] GC-05-039-1-39

90 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25