SNP Profiles matching ICS 1

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 Key

 1234567891011121314
_Input profile
TTAGGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._PA_70_[PER]
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._GC-04-053-3-17
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._NA
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._ICS_1
TTAAGGCTTTAACCTTCTTTAAAATTAG
16._MARPER_45
TTAAGGCT__AACC__CT__AAAA__AG
17._RUQ_847
TTAGGGCTTTAACCTTCTCTAAAATTAG
18._RUQ_847
__AAGGCT______TT________TTAG
19._RUQ_817
__AAGGCT______TT________TTAG
 1516171819202122232425262728
_Input profile
TTAAGGTTCCCGGTGGTTACCCTTTTCC
1._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
2._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
3._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
4._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
5._ICS_1
TTAAGGTTCCCGGTGGTTACCCTTTTCC
6._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
7._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
8._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
9._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
10._NA
TTAAGGTTCCCGGTGGTTACCCTTTTCC
11._PA_70_[PER]
TTAAGGTTCCCGGTGGTTACCCTTTTCC
12._GC-04-053-3-17
TTAAGGTTCCCGGTGGTTACCCTTTTCC
13._ICS_1
TTAAGGTTCCCGGTGGTTAC__TTTTCC
14._NA
TTAAGGTTCCCGGTGGTTAC__TTTTCC
15._ICS_1
TTAAGGTTCC__GTGGTTACCCTTTTCC
16._MARPER_45
TTAAGG__CC__GTGGTT__CC__TTCC
17._RUQ_847
TTAAGGTTCCCGGTGGCTACCCTTCTCC
18._RUQ_847
________CCCGGT__TTAACCTTTTCC
19._RUQ_817
________CCCGGT__TTAACCTTTTCC
 293031323334353637383940  
_Input profile
AGGGATCTAGCGAACCGTAAATGGX_XX_X
1._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
2._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
3._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
4._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
5._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
6._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
7._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
8._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
9._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
10._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
11._PA_70_[PER]
AGGGATCTAGCGAACCGTAAATGGX_XX_X
12._GC-04-053-3-17
AGGGATCTAGCGAACCGTAAATGGX_XX_X
13._ICS_1
AGGGATCTAGCGAACCGTAAATGGX_XX_X
14._NA
AGGGATCTAGCGAACCGTAAATGGX_XX_X
15._ICS_1
__GGATCTAGCGAACCGTAAATGGX_XX_X
16._MARPER_45
AGGG__CTAG______GT__AT__X_XX_X
17._RUQ_847
AGGGATCTAGCGAACCGTAAATGGX_XX_X
18._RUQ_847
AG__ATCTAGCGAACCGTAA____X_XX_X
19._RUQ_817
AG__ATCTAGCGAACCGTAA____X_XX_X

Input profile: ICS_1 RUQ_847

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._ICS_1

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._ICS_1 NA

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._ICS_1 NA

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._ICS_1 NA

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._ICS_1 NA

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._ICS_1 NA

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._PA_70_[PER]

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_70_[PER] GC-04-053-3-17

98.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

13._ICS_1

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

14._ICS_1 NA

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._ICS_1

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

16._MARPER_45

98.1 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

17._ICS_1 RUQ_847

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_1 RUQ_847

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_5 RUQ_817

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25