SNP Profiles matching ICS 1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTAAGGCTTTAACCTTCTTTAAAATTAG
1._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
2._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
3._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
4._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
5._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
6._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
7._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
8._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
9._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
10._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
11._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
12._PA_70_[PER]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
13._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
14._ICS_1___
TTAAGGCTTTAACCTTCTTTAAAATTAG
15._MARPER_45___
TTAAGGCT__AACC__CT__AAAA__AG
16._ICS_1___
TTAGGGCTTTAACCTTCTTTAAAATTAG
17._ICS_1___
__AAGGCT______TT________TTAG
18._ICS_5___
__AAGGCT______TT________TTAG
19._ICS_1___
TTAGGGCTTTAACCTTCTCTAAAATTAG
20._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
21._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
22._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
23._OC_61_[VEN]___
TTAAGGCTTTAACCTTCTTTAAAATTAG
24._MARPER_34___
TTAAGGTT__AACC__CT__AAAA__AG
25._MARPER_55___
TTAAGGCT__AACC__CT__AAAA__AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGTTCCGTGGTTACCCTTTTCCGG
1._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
2._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
3._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
4._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
5._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
6._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
7._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
8._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
9._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
10._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
11._PA_70_[PER]___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
12._PA_70_[PER]___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
13._ICS_1___
TTAAGGTTCCGTGGTTAC__TTTTCCGG
14._ICS_1___
TTAAGGTTCCGTGGTTAC__TTTTCCGG
15._MARPER_45___
TTAAGG__CCGTGGTT__CC__TTCCGG
16._ICS_1___
TTAAGGTTCCGTGGTTACCCTTTTCCGG
17._ICS_1___
________CCGT__TTAACCTTTTCC__
18._ICS_5___
________CCGT__TTAACCTTTTCC__
19._ICS_1___
TTAAGGTTCCGTGGCTACCCTTCTCCGG
20._OC_61_[VEN]___
TTAAGGTTCCGGGGTTCCCCTTTTCCGG
21._OC_61_[VEN]___
TTAAGGTTCCGGGGTTCCCCTTTTCCGG
22._OC_61_[VEN]___
TTAAGGTTCCGGGGTTCCCCTTTTCCGG
23._OC_61_[VEN]___
TTAAGGTTCCGGGGTTCCCCTTTTCCGG
24._MARPER_34___
TTAAGG__CCGTGGCT__CC__CTCCGG
25._MARPER_55___
TTAAGG__CCGTGGCT__CC__CTCCGG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
1._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
2._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
3._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
4._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
5._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
6._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
7._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
8._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
9._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
10._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
11._PA_70_[PER]___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
12._PA_70_[PER]___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
13._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
14._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
15._MARPER_45___
__CTAG______GT__AT__X_XX_XX_XX_X
16._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
17._ICS_1___
ATCTAGCGAACCGTAA____X_XX_XX_XX_X
18._ICS_5___
ATCTAGCGAACCGTAA____X_XX_XX_XX_X
19._ICS_1___
ATCTAGCGAACCGTAAATGGX_XX_XX_XX_X
20._OC_61_[VEN]___
AACCAGCGAACCTTACTTGGX_XX_XX_XX_X
21._OC_61_[VEN]___
AACCAGCGAACCTTACTTGGX_XX_XX_XX_X
22._OC_61_[VEN]___
AACCAGCGAACCTTACTTGGX_XX_XX_XX_X
23._OC_61_[VEN]___
AACCAGCGAACCTTACTTGGX_XX_XX_XX_X
24._MARPER_34___
__TTAG______GT__AA__X_XX_XX_XX_X
25._MARPER_55___
__CCAA______GG__AT__X_XX_XX_XX_X

Input profile: ICS_1

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

1._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

2._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

3._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

4._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

5._ICS_1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

6._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._ICS_1 NA

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._PA_70_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

12._PA_70_[PER] GC-04-053-3-17

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

13._ICS_1

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

14._ICS_1 NA

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._MARPER_45

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

16._ICS_1 RUQ_847

98.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_1 RUQ_847

97.7 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._ICS_5 RUQ_817

97.7 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

94.7 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._OC_61_[VEN]

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 1 > FP
 Dapeng Zhang, 2016

21._OC_61_[VEN]

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5139 2
 Dapeng Zhang, 2016

22._OC_61_[VEN] GC-05-039-1-39

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._OC_61_[VEN] GC-05-039-1-39

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._MARPER_34

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 559
 Dapeng Zhang, 2014

25._MARPER_55

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP429 29TcSNP372 30TcSNP242
31TcSNP230 32TcSNP226 33TcSNP193 34TcSNP151 35TcSNP150
36TcSNP144 37TcSNP32 38TcSNP25