SNP Profiles matching GU 255 /P

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 Key

 1234567891011121314
_Input profile
CCAACGTTTTAATTTTCCCCAAGGCCAG
1._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
2._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
3._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGCCAG
4._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
5._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
6._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
7._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGCCAG
8._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
9._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
10._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
11._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
12._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
13._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
14._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
15._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
16._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
17._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
18._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGG_AG
19._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGG_AG
20._NA_168
CCAACGTTTTAATTTTCCCCAAGGCCAG
21._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGCCAG
22._MARPER_37
CCAACCTT-AATT-CC-AAAG-AG
23._RUQ_1089
CCAGCCTTTTACTTTTCCCCAAAGCTAG
 1516171819202122232425262728
_Input profile
TTATGGCTCTCCGGAACCAAGGGTCCCC
1._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
2._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
3._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
4._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
5._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
6._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
7._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
8._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
9._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
10._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
11._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
12._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
13._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
14._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
15._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
16._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
17._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
18._GU_255_/P
TTATGGCTCTCCGGAACCAAGGGTCCCC
19._GC-08-282-8-54
TTATGGCTCTCCGGAACCAAGGGTCCCC
20._NA_168
TTATGGCTCTCCGGAACCAAGGGTCCCC
21._GC-01-112-6-09
TTATGGCTCTCCGGAACCAAGGGTCCCC
22._MARPER_37
TTATGG-CC-GGAACC-GG-CCCC
23._RUQ_1089
TTATGGCTCCCCGGAACCAAGGGTCCCC
 293031323334353637383940  
_Input profile
AGGGATCTAGCCAACTGGACTTGGX_XX_X
1._GU_255_/P
AGGGATCTAGCCAACTGGACTTGGX_XX_X
2._GU_255_/P
AGGGATCTAGCCAACTGGACTTGGX_XX_X
3._GU_255_/P
AGGGATCTAGCCAACTGGACTTGGX_XX_X
4._GC-08-282-8-54
AGGGATCTAGCCAACTGGACTTGGX_XX_X
5._GC-08-282-8-54
AGGGATCTAGCCAACTGGACTTGGX_XX_X
6._GC-08-282-8-54
AGGGATCTAGCCAACTGGACTTGGX_XX_X
7._GC-08-282-8-54
AGGGATCTAGCCAACTGGACTTGGX_XX_X
8._NA_168
AGGGATCTAGCCAACTGGACTTGGX_XX_X
9._NA_168
AGGGATCTAGCCAACTGGACTTGGX_XX_X
10._NA_168
AGGGATCTAGCCAACTGGACTTGGX_XX_X
11._NA_168
AGGGATCTAGCCAACTGGACTTGGX_XX_X
12._NA_168
AGGGATCTAGCCAACTGGACTTGGX_XX_X
13._GC-01-112-6-09
AGGGATCTAGCCAACTGGACTTGGX_XX_X
14._GC-01-112-6-09
AGGGATCTAGCCAACTGGACTTGGX_XX_X
15._GC-01-112-6-09
AGGGATCTAGCCAACTGGACTTGGX_XX_X
16._GC-01-112-6-09
AGGGATCTAGCCAACTGGACTTGGX_XX_X
17._GC-01-112-6-09
AGGGATCTAGCCAACTGGACTTGGX_XX_X
18._GU_255_/P
AGGGATCTAGCCAACTGGACTTGGX_XX_X
19._GC-08-282-8-54
AGGGATCTAGCCAACTGGACTTGGX_XX_X
20._NA_168
AGGGATCTAGCCAA_GGACTTGGX_XX_X
21._GC-01-112-6-09
AGGGATCTAGCCAA_GGACTTGGX_XX_X
22._MARPER_37
AAGG-CTAG---GG-TT-X_XX_X
23._RUQ_1089
AAGGATCTAGCCACCTGGACTTGGX_XX_X

Input profile: GU_255_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8854 3
 Dapeng Zhang, 2016

1._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 9
 Dapeng Zhang, 2016

2._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 6
 Dapeng Zhang, 2016

3._GU_255_/P

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 4
 Dapeng Zhang, 2016

4._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._GU_255 GC-08-282-8-54

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

9._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

10._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

11._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

12._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

14._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

15._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

16._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._NA_168 GC-01-112-6-09

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 1
 Dapeng Zhang, 2016

19._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

20._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

21._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

22._MARPER_37

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 661
 Dapeng Zhang, 2014

23._ICS_39 RUQ_1089

90 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25