SNP Profiles matching GU 255 /P

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 Key

 1234567891011121314
_Input profile
CCAACGTTTTAATTTTCCCCAAGGAGTT
1._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGAGTT
2._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGAGTT
3._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGAGTT
4._GU_255_/P
CCAACGTTTTAATTTTCCCCAAGGAGTT
5._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGAGTT
6._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGAGTT
7._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGAGTT
8._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGAGTT
9._GC-08-282-8-54
CCAACGTTTTAATTTTCCCCAAGGAGTT
10._NA_168
CCAACGTTTTAATTTTCCCCAAGGAGTT
11._NA_168
CCAACGTTTTAATTTTCCCCAAGGAGTT
12._NA_168
CCAACGTTTTAATTTTCCCCAAGGAGTT
13._NA_168
CCAACGTTTTAATTTTCCCCAAGGAGTT
14._NA_168
CCAACGTTTTAATTTTCCCCAAGGAGTT
15._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGAGTT
16._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGAGTT
17._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGAGTT
18._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGAGTT
19._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGAGTT
20._NA_168
CCAACGTTTTAATTTTCCCCAAGGAGTT
21._GC-01-112-6-09
CCAACGTTTTAATTTTCCCCAAGGAGTT
22._MARPER_37
CCAACCTT-AATT-CC-AAAGAGTT
23._RUQ_1089
CCAGCCTTTTACTTTTCCCCAAAGAGTT
 1516171819202122232425262728
_Input profile
ATGGCTCTCCGGAACCAAGGGTCCCCAG
1._GU_255_/P
ATGGCTCTCCGGAACCAAGGGTCCCCAG
2._GU_255_/P
ATGGCTCTCCGGAACCAAGGGTCCCCAG
3._GU_255_/P
ATGGCTCTCCGGAACCAAGGGTCCCCAG
4._GU_255_/P
ATGGCTCTCCGGAACCAAGGGTCCCCAG
5._GC-08-282-8-54
ATGGCTCTCCGGAACCAAGGGTCCCCAG
6._GC-08-282-8-54
ATGGCTCTCCGGAACCAAGGGTCCCCAG
7._GC-08-282-8-54
ATGGCTCTCCGGAACCAAGGGTCCCCAG
8._GC-08-282-8-54
ATGGCTCTCCGGAACCAAGGGTCCCCAG
9._GC-08-282-8-54
ATGGCTCTCCGGAACCAAGGGTCCCCAG
10._NA_168
ATGGCTCTCCGGAACCAAGGGTCCCCAG
11._NA_168
ATGGCTCTCCGGAACCAAGGGTCCCCAG
12._NA_168
ATGGCTCTCCGGAACCAAGGGTCCCCAG
13._NA_168
ATGGCTCTCCGGAACCAAGGGTCCCCAG
14._NA_168
ATGGCTCTCCGGAACCAAGGGTCCCCAG
15._GC-01-112-6-09
ATGGCTCTCCGGAACCAAGGGTCCCCAG
16._GC-01-112-6-09
ATGGCTCTCCGGAACCAAGGGTCCCCAG
17._GC-01-112-6-09
ATGGCTCTCCGGAACCAAGGGTCCCCAG
18._GC-01-112-6-09
ATGGCTCTCCGGAACCAAGGGTCCCCAG
19._GC-01-112-6-09
ATGGCTCTCCGGAACCAAGGGTCCCCAG
20._NA_168
ATGGCTCTCCGGAACCAAGGGTCCCCAG
21._GC-01-112-6-09
ATGGCTCTCCGGAACCAAGGGTCCCCAG
22._MARPER_37
ATGG-CC-GGAACC-GG-CCCCAA
23._RUQ_1089
ATGGCTCCCCGGAACCAAGGGTCCCCAA
 2930313233343536373839   
_Input profile
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
1._GU_255_/P
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
2._GU_255_/P
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
3._GU_255_/P
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
4._GU_255_/P
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
5._GC-08-282-8-54
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
6._GC-08-282-8-54
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
7._GC-08-282-8-54
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
8._GC-08-282-8-54
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
9._GC-08-282-8-54
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
10._NA_168
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
11._NA_168
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
12._NA_168
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
13._NA_168
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
14._NA_168
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
15._GC-01-112-6-09
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
16._GC-01-112-6-09
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
17._GC-01-112-6-09
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
18._GC-01-112-6-09
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
19._GC-01-112-6-09
GGATCTAGCCAACTGGACTTGGX_XX_XX_X
20._NA_168
GGATCTAGCCAA_GGACTTGGX_XX_XX_X
21._GC-01-112-6-09
GGATCTAGCCAA_GGACTTGGX_XX_XX_X
22._MARPER_37
GG-CTAG---GG-TT-X_XX_XX_X
23._RUQ_1089
GGATCTAGCCACCTGGACTTGGX_XX_XX_X

Input profile: GU_255_/P

 
Mars Center for Cocoa Science, Brazil
Location: 8854 1
 Dapeng Zhang, 2016

1._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 9
 Dapeng Zhang, 2016

2._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 6
 Dapeng Zhang, 2016

3._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 4
 Dapeng Zhang, 2016

4._GU_255_/P

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 3
 Dapeng Zhang, 2016

5._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._GU_255 GC-08-282-8-54

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

11._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

12._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

13._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

14._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

15._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

17._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

18._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._NA_168 GC-01-112-6-09

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

20._NA_168

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

21._NA_168 GC-01-112-6-09

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

22._MARPER_37

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 661
 Dapeng Zhang, 2014

23._ICS_39 RUQ_1089

91 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25