SNP Profiles matching EET 400 [ECU]

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 Key

 1234567891011121314
_Input profile
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
1._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
2._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
3._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
4._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
5._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
6._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
7._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
8._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
9._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
10._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
11._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
12._GC-01-115-6-12
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
13._GC-01-115-6-12
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
14._GC-01-115-6-12
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
15._GC-08-162-4-05
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
16._GC-08-163-4-06
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
17._GC-08-163-4-06
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
18._POUND_10
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
19._POUND_10_/B
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
20._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
21._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
22._POUND_10_/B
CCAAGGTT__TTTTCCCCAAGGCCGGTT
23._GC-01-115-6-12
CCAAGGTT__TTTTCCCCAAGGCCGGTT
24._RUQ_1618
__AAGGTT____TT________CCGG__
25._EET_400_[ECU]
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
26._GC-01-066-4-02
CCAAGGTTTTTTTTCCCCAAGGCCGGTT
27._RUQ_1618
CCAGGGTTTTTTTTCCCCAAGGCCGGTT
 1516171819202122232425262728
_Input profile
AAGGTTTTCGGGAACCAAGGTTCCCCAA
1._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
2._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
3._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
4._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
5._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
6._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
7._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
8._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
9._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
10._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
11._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
12._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
13._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
14._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
15._GC-08-162-4-05
AAGGTTTTCGGGAACCAAGGTTCCCCAA
16._GC-08-163-4-06
AAGGTTTTCGGGAACCAAGGTTCCCCAA
17._GC-08-163-4-06
AAGGTTTTCGGGAACCAAGGTTCCCCAA
18._POUND_10
AAGGTTTTCGGGAACCAAGGTTCCCCAA
19._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
20._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
21._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
22._POUND_10_/B
AAGGTTTTCGGGAACCAAGGTTCCCCAA
23._GC-01-115-6-12
AAGGTTTTCGGGAACCAAGGTTCCCCAA
24._RUQ_1618
______TTCGGG__CCAAGGTTCCCCAA
25._EET_400_[ECU]
AAGGTTTTCGGGAACCAAGGTTCCCCAA
26._GC-01-066-4-02
AAGGTTTTCGGGAACCAAGGTTCCCCAA
27._RUQ_1618
AAGGTTTTCGGGAACCAAGGTTCCCCAA
 2930313233343536373839   
_Input profile
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
1._EET_400_[ECU]
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
2._EET_400_[ECU]
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
3._GC-01-066-4-02
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
4._GC-01-066-4-02
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
5._GC-01-066-4-02
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
6._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
7._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
8._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
9._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
10._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
11._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
12._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
13._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
14._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
15._GC-08-162-4-05
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
16._GC-08-163-4-06
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
17._GC-08-163-4-06
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
18._POUND_10
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
19._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
20._EET_400_[ECU]
GGAACCGGCCAA__GGAATTGGX_XX_XX_X
21._GC-01-066-4-02
GGAACCGGCCAA__GGAATTGGX_XX_XX_X
22._POUND_10_/B
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
23._GC-01-115-6-12
GGAACCGGCCAACCGGAATTGGX_XX_XX_X
24._RUQ_1618
__AACCGGCCAACCGGAA____X_XX_XX_X
25._EET_400_[ECU]
GGAACCGGCCAACTGGAATTGGX_XX_XX_X
26._GC-01-066-4-02
GGAACCGGCCAACTGGAATTGGX_XX_XX_X
27._RUQ_1618
GGAACCGGCCAACCGGAATTGGX_XX_XX_X

Input profile: EET_400_[ECU]

 
Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

1._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

3._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_400_[ECU] GC-01-066-4-02

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

7._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

11._POUND_10_/B

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

12._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

13._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

14._POUND_10_/B GC-01-115-6-12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

15._POUND_10_/B GC-08-162-4-05

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._POUND_10_/B GC-08-163-4-06

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._POUND_10

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P11 1146
 Dapeng Zhang, 2016

19._POUND_10_/B

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

20._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

21._EET_400_[ECU] GC-01-066-4-02

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

22._POUND_10_/B

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._POUND_10_/B GC-01-115-6-12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

24._POUND_10_/B RUQ_1618

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._EET_400_[ECU]

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

26._EET_400_[ECU] GC-01-066-4-02

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._POUND_10_/B RUQ_1618

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25