SNP Profiles matching EET 400 [ECU]

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCAGCCTTCTACTTGTCTCCAAGGCCAG
1._EET_400_[ECU]
CCAGCCTTCTACTTGTCTCCAAGGCCAA
2._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
3._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
4._EET_400_[ECU]
CCAGCCTTCTAATTGTCTCCAAGGCCAA
5._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
6._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
7._GC-01-066-4-02
CCAGCCTTCTAATTGTCTCCAAGGCCAA
8._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
9._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
10._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
11._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
12._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
13._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
14._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
15._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
16._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
17._GC-01-115-6-12
CCAGCCTTCTAATTGTCTCCAAGGCCAA
18._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
19._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
20._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
21._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
22._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
23._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
24._POUND_10_/B
CCAGCCTTCTAATTGTCTCCAAGGCCAA
25._GC-08-162-4-05
CCAGCCTTCTAATTGTCTCCAAGGCCAA
26._EET_400_[ECU]
__AGCCTT__ACTTGTCT____GGCCAA
27._RUQ_760
__AGCCTT______GT________CCAA
28._RUQ_745
CCAGCCTTCTACTTGGCTCCAAGGCCAA
29._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
30._EET_399_[ECU]
CCAGCCTTCTAATTGGCTCCAAGGCCAA
31._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
32._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
33._GC-04-047-3-11
CCAGCCTTCTAATTGGCTCCAAGGCCAA
34._UF_12
CCAGCCTTCTAATTGGCTCCAAGGCCAA
 1516171819202122232425262728
_Input profile
TTAACGCTCTCGGGAACTACGGGGCTAC
1._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
2._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
3._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
4._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
5._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
6._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
7._GC-01-066-4-02
TTAACGCTCTCGGGAACTACGGGGCTAC
8._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
9._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
10._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
11._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
12._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
13._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
14._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
15._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
16._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
17._GC-01-115-6-12
TTAACGCTCTCGGGAACTACGGGGCTAC
18._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
19._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
20._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
21._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
22._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
23._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
24._POUND_10_/B
TTAACGCTCTCGGGAACTACGGGGCTAC
25._GC-08-162-4-05
TTAACGCTCTCGGGAACTACGGGGCTAC
26._EET_400_[ECU]
TTAACGCTCTCGGGAACTACGGGGCTAC
27._RUQ_760
________TTCGGG__CTACCGGGCTAC
28._RUQ_745
TTAACGCTCTCGGTAACTACGGGGCTAC
29._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
30._EET_399_[ECU]
TTAACGCTCTCGGTAACTACGGGGCTAC
31._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
32._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
33._GC-04-047-3-11
TTAACGCTCTCGGTAACTACGGGGCTAC
34._UF_12
TTAACGCTCTCGGTAACTACGGGGCTAC
 293031323334353637383940  
_Input profile
AGGGAACTAGCCCCCTGTACATGGX_XX_X
1._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
2._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
3._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
4._EET_400_[ECU]
AGGGAACTAGCCCCCTGTACATGGX_XX_X
5._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
6._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
7._GC-01-066-4-02
AGGGAACTAGCCCCCTGTACATGGX_XX_X
8._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
9._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
10._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
11._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
12._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
13._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
14._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
15._POUND_10_/B
AGGGAACTAGCCCCCTGTACATGGX_XX_X
16._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
17._GC-01-115-6-12
AGGGAACTAGCCCCCTGTACATGGX_XX_X
18._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
19._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
20._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
21._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
22._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
23._GC-08-162-4-05
AGGGAACTAGCCCCCTGTACATGGX_XX_X
24._POUND_10_/B
AGGG__CTAGCCCCCTGTACATGGX_XX_X
25._GC-08-162-4-05
AGGG__CTAGCCCCCTGTACATGGX_XX_X
26._EET_400_[ECU]
AGGGAACCAG__CCCTGTACATGGX_XX_X
27._RUQ_760
AG__AACTAGCCCCCTGTAC____X_XX_X
28._RUQ_745
AGGGAACCGGGGCCCTGTACATGGX_XX_X
29._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
30._EET_399_[ECU]
AGGGAACCGGGGCCCTGTACATGGX_XX_X
31._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
32._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
33._GC-04-047-3-11
AGGGAACCGGGGCCCTGTACATGGX_XX_X
34._UF_12
AGGGAACCGGGGCCCTGTACATGGX_XX_X

Input profile: EET_400_[ECU] RUQ_760

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._EET_400_[ECU]

98.8 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

2._EET_400_[ECU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

3._EET_400_[ECU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

4._EET_400_[ECU]

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._EET_400_[ECU] GC-01-066-4-02

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

8._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

9._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

10._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

11._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

12._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

13._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

14._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

15._POUND_10_/B

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

16._POUND_10_/B GC-01-115-6-12

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._POUND_10_/B GC-01-115-6-12

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._POUND_10_/B GC-08-162-4-05

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-162-4-05

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._POUND_10_/B GC-08-162-4-05

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._POUND_10_/B GC-08-162-4-05

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._POUND_10_/B

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

25._POUND_10_/B GC-08-162-4-05

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

26._EET_400_[ECU]

97.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

27._EET_400_[ECU] RUQ_760

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._EET_399_[ECU] RUQ_745

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._EET_399_[ECU]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

30._EET_399_[ECU]

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

31._EET_399_[ECU] GC-04-047-3-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

32._EET_399_[ECU] GC-04-047-3-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

33._EET_399_[ECU] GC-04-047-3-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

34._UF_12

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25