SNP Profiles matching EET 400 [ECU]

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 Key

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_Input profile
AGCCTTACTTGTCTGGCCAATTAACGCT
1._EET_400_[ECU]
AGCCTTACTTGTCTGGCCAATTAACGCT
2._EET_400_[ECU]
AGCCTTAATTGTCTGGCCAATTAACGCT
3._EET_400_[ECU]
AGCCTTAATTGTCTGGCCAATTAACGCT
4._EET_400_[ECU]
AGCCTTAATTGTCTGGCCAATTAACGCT
5._GC-01-066-4-02
AGCCTTAATTGTCTGGCCAATTAACGCT
6._GC-01-066-4-02
AGCCTTAATTGTCTGGCCAATTAACGCT
7._GC-01-066-4-02
AGCCTTAATTGTCTGGCCAATTAACGCT
8._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
9._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
10._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
11._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
12._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
13._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
14._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
15._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
16._GC-01-115-6-12
AGCCTTAATTGTCTGGCCAATTAACGCT
17._GC-01-115-6-12
AGCCTTAATTGTCTGGCCAATTAACGCT
18._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
19._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
20._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
21._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
22._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
23._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
24._RUQ_760
AGCCTTACTTGTCTGGCCAGTTAACGCT
25._POUND_10_/B
AGCCTTAATTGTCTGGCCAATTAACGCT
26._GC-08-162-4-05
AGCCTTAATTGTCTGGCCAATTAACGCT
27._RUQ_745
AGCCTTACTTGGCTGGCCAATTAACGCT
28._EET_399_[ECU]
AGCCTTAATTGGCTGGCCAATTAACGCT
29._EET_399_[ECU]
AGCCTTAATTGGCTGGCCAATTAACGCT
30._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
31._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
32._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
33._UF_12
AGCCTTAATTGGCTGGCCAATTAACGCT
34._EET_399_[ECU]
AGCCTTAATTGGCTGGCCAATTAACGCT
35._EET_399_[ECU]
AGCCTTAATTGGCTGGCCAATTAACGCT
36._EET_399_[ECU]
AGCCTTAATTGGCTGGCCAATTAACGCT
37._EET_399_[ECU]
AGCCTTAATTGGCTGGCCAATTAACGCT
38._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
39._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
40._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
41._GC-04-047-3-11
AGCCTTAATTGGCTGGCCAATTAACGCT
42._RUQ_760
AGCCTT____GT____CCAA________
43._RUQ_745
AGCCTT____GG____CCAA________
 1516171819202122232425262728
_Input profile
CTCGGGAACTACGGGGCTACAGGGAACC
1._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
2._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
3._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
4._EET_400_[ECU]
CTCGGGAACTACGGGGCTACAGGGAACT
5._GC-01-066-4-02
CTCGGGAACTACGGGGCTACAGGGAACT
6._GC-01-066-4-02
CTCGGGAACTACGGGGCTACAGGGAACT
7._GC-01-066-4-02
CTCGGGAACTACGGGGCTACAGGGAACT
8._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
9._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
10._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
11._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
12._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
13._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
14._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
15._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGGAACT
16._GC-01-115-6-12
CTCGGGAACTACGGGGCTACAGGGAACT
17._GC-01-115-6-12
CTCGGGAACTACGGGGCTACAGGGAACT
18._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGGAACT
19._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGGAACT
20._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGGAACT
21._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGGAACT
22._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGGAACT
23._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGGAACT
24._RUQ_760
CTCGGGAACTACGGGGCTACAGGGAACT
25._POUND_10_/B
CTCGGGAACTACGGGGCTACAGGG__CT
26._GC-08-162-4-05
CTCGGGAACTACGGGGCTACAGGG__CT
27._RUQ_745
CTCGGTAACTACGGGGCTACAGGGAACC
28._EET_399_[ECU]
CTCGGTAACTACGGGGCTACAGGGAACC
29._EET_399_[ECU]
CTCGGTAACTACGGGGCTACAGGGAACC
30._GC-04-047-3-11
CTCGGTAACTACGGGGCTACAGGGAACC
31._GC-04-047-3-11
CTCGGTAACTACGGGGCTACAGGGAACC
32._GC-04-047-3-11
CTCGGTAACTACGGGGCTACAGGGAACC
33._UF_12
CTCGGTAACTACGGGGCTACAGGGAACC
34._EET_399_[ECU]
CTCGGTAACTACGGGGCTACAGGGAACC
35._EET_399_[ECU]
CTCGGTAACTACGGGGCTACAGGGAACC
36._EET_399_[ECU]
CTCGGTAACTACGG__CTACAGGGAACC
37._EET_399_[ECU]
CTCGGTAACTACGGGGCT__AGGGAACC
38._GC-04-047-3-11
CTCGGTAACTACGGGGCT__AGGGAACC
39._GC-04-047-3-11
CTCGGTAACTACGG__CTACAGGGAACC
40._GC-04-047-3-11
CTCGGTAACTACGGGGCTACAGGGAACC
41._GC-04-047-3-11
CTCGGTAACTACGGGGCTACAGGGAACC
42._RUQ_760
TTCGGG__CTACCGGGCTACAG__AACT
43._RUQ_745
TTCGGT__CTACGGGGCTACAG__AACC
 29303132333435       
_Input profile
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
1._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
2._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
3._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
4._EET_400_[ECU]
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-066-4-02
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
6._GC-01-066-4-02
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
7._GC-01-066-4-02
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
8._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
9._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
10._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
11._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
12._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
13._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
14._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
15._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
16._GC-01-115-6-12
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
17._GC-01-115-6-12
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
18._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
19._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
20._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
21._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
22._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
23._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
24._RUQ_760
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
25._POUND_10_/B
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
26._GC-08-162-4-05
AGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
27._RUQ_745
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
28._EET_399_[ECU]
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
29._EET_399_[ECU]
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
30._GC-04-047-3-11
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
31._GC-04-047-3-11
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
32._GC-04-047-3-11
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
33._UF_12
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
34._EET_399_[ECU]
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
35._EET_399_[ECU]
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
36._EET_399_[ECU]
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
37._EET_399_[ECU]
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
38._GC-04-047-3-11
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
39._GC-04-047-3-11
GGCCCTGTACATGGX_XX_XX_XX_XX_XX_XX_X
40._GC-04-047-3-11
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
41._GC-04-047-3-11
GGCC__GTACATGGX_XX_XX_XX_XX_XX_XX_X
42._RUQ_760
AGCCCTGTAC____X_XX_XX_XX_XX_XX_XX_X
43._RUQ_745
GGCCCTGTAC____X_XX_XX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU]

 
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

1._EET_400_[ECU]

98.6 %
35 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

2._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

3._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

4._EET_400_[ECU]

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._EET_400_[ECU] GC-01-066-4-02

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

8._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

9._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

10._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

11._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

12._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

13._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

14._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

15._POUND_10_/B

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

16._POUND_10_/B GC-01-115-6-12

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

17._POUND_10_/B GC-01-115-6-12

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

97.1 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

24._EET_400_[ECU] RUQ_760

97.1 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._POUND_10_/B

97.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

26._POUND_10_/B GC-08-162-4-05

97.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_399_[ECU] RUQ_745

95.7 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._EET_399_[ECU]

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 6 > FP
 Dapeng Zhang, 2016

29._EET_399_[ECU]

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 2
 Dapeng Zhang, 2016

30._EET_399_[ECU] GC-04-047-3-11

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._EET_399_[ECU] GC-04-047-3-11

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018

32._EET_399_[ECU] GC-04-047-3-11

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

33._UF_12

94.3 %
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

34._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 8 > FP
 Dapeng Zhang, 2016

35._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 5 > FP
 Dapeng Zhang, 2016

36._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 3 > FP
 Dapeng Zhang, 2016

37._EET_399_[ECU]

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4311 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

38._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

39._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

40._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018

41._EET_399_[ECU] GC-04-047-3-11

94.1 %
34 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

42._EET_400_[ECU] RUQ_760

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

43._EET_399_[ECU] RUQ_745

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP1484 2TcSNP1458 3TcSNP1442 4TcSNP1350 5TcSNP1270
6TcSNP1253 7TcSNP1165 8TcSNP1062 9TcSNP1060 10TcSNP998
11TcSNP994 12TcSNP953 13TcSNP929 14TcSNP917 15TcSNP891
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP230 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25