SNP Profiles matching EET 400 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGCCTTCCTTTTCCCCAAGGCCAG
1._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
2._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
3._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
4._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
5._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
6._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
7._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
8._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
9._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
10._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
11._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
12._PA_156_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
13._PA_186_[PER]___
CCAGGGCTTTCCTTTTCCCCAAGGCCAG
14._PA_156_[PER]___
CCAGGGCTTTCCTTTTCC__AAGGCCAG
15._PA_156_[PER]___
__AGGGCT______TT________CCAG
16._PA_289_[PER]___
CCGGGGCTTTCCTTTTCCCCAAGGCCAA
17._PA_88_[PER]___
__AGGGCT__CCCTTTCC__AAAGCCAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACGTTCCGGGGAATTCCGGTTCCAC
1._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
2._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
3._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
4._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
5._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
6._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
7._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
8._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
9._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
10._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
11._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
12._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
13._PA_186_[PER]___
CCAACGTTCCGG__AATTCCCGTTCCAC
14._PA_156_[PER]___
CCAACGTTCCGGGGAATTCCCGTTCCAC
15._PA_156_[PER]___
________CCGGGG__TTCCCGTTCCAC
16._PA_289_[PER]___
TTAACGTTCCGG__AATTCCGGGTCCAA
17._PA_88_[PER]___
CTAACGTTCCGGGGAATTCCGGGGCTCC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACCAACCACCTGGACATGGX_XX_X
1._PA_156_[PER]___
AAGGAACCAACCAA__GGACATGGX_XX_X
2._PA_156_[PER]___
AAGGAACCAACCAA__GGACATGGX_XX_X
3._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
4._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
5._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
6._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
7._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
8._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
9._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
10._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
11._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
12._PA_156_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
13._PA_186_[PER]___
AAGGAACCAACCAACCGGACATGGX_XX_X
14._PA_156_[PER]___
AAGGAACCAA__AACCGGACATGGX_XX_X
15._PA_156_[PER]___
AA__AACCAACCAACCGGAC____X_XX_X
16._PA_289_[PER]___
AAGGAACCAACCACCTGGCCATGGX_XX_X
17._PA_88_[PER]___
AAGGAACCAA__AC__GGACATGGX_XX_X

Input profile: EET_400_[ECU]

 
Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

1._PA_156_[PER]

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

2._PA_156_[PER] GC-05-137-3-39

94.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._PA_156_[PER]

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

7._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

9._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

10._PA_156_[PER] GC-05-137-3-39

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

11._PA_156_[PER] RUQ_1531

93.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._PA_156_[PER]

93.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

13._PA_186_[PER]

93.6 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

14._PA_156_[PER]

93.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

15._PA_156_[PER] RUQ_1531

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_289_[PER]

91 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 803
 Dapeng Zhang, 2014

17._PA_88_[PER]

90 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D677
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25