SNP Profiles matching PA 41 [PER]

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 Key

 1234567891011121314
_Input profile
GGAAACGTCCACAGCCAAGGAGACCTGT
1._PA_72_[PER]
GGAAACGTCCACAGCCAAGGAAACCTGT
2._PA_72_[PER]
GGAAACGTCCACAGCCAAGGAAACCTGT
3._PA_32_[PER]
GGAAACGTCCACGGCCAAGGAAACCTGT
4._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
5._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
6._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
7._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
8._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
9._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
10._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
11._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
12._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
13._PA_72_[PER]
GGAAACGTCCAAAGCCAAGGAAACCTGT
14._RUQ_1569
____ACGGCCAAAGCCAA__AAACCTGT
15._RUQ_1564
____ACGGCCAAAGCCAA__AAACCTGT
16._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
17._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
18._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
19._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
20._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
21._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
22._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
23._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
24._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
25._GC-08-051-1-62
GGAAACGTCCAAAGCCAAGGAAACCTGT
26._PA_171_[PER]
GGAAACGTCCAAAGCCAAGGAGAACTTT
 1516171819202122232425262728
_Input profile
CGCCTTAATTGGCCCCCCGGAACTAGCC
1._PA_72_[PER]
CGCCTTAATTGGCCCCCTGGAACTAGCC
2._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
3._PA_32_[PER]
CGCCTTAATTGGCCCCCCCGAACTAACC
4._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
5._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
6._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
7._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
8._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
9._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
10._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
11._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
12._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
13._PA_72_[PER]
CGCCTTAA__GG__CCCTGGAACTAGCC
14._RUQ_1569
CGCCTT____GGCCCC________AGCC
15._RUQ_1564
CGCCTT____GGCCCC________AGCC
16._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
17._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
18._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
19._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
20._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
21._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
22._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
23._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
24._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
25._GC-08-051-1-62
CGCCTTAAGGGGCCCCCTGGAACTAGCC
26._PA_171_[PER]
CGACTTAATTGGCCCCCCCGAACCAACC
 293031323334353637383940  
_Input profile
GGAACCCCTTCTACTTCCGGAGCCX_XX_X
1._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
2._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
3._PA_32_[PER]
AGAACCCCTTCTACTTCTGGAGCCX_XX_X
4._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
5._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
6._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
7._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
8._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
9._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
10._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
11._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
12._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
13._PA_72_[PER]
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
14._RUQ_1569
________TT______CCCGAG__X_XX_X
15._RUQ_1564
________TT______CCCGAG__X_XX_X
16._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
17._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
18._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
19._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
20._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
21._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
22._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
23._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
24._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
25._GC-08-051-1-62
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
26._PA_171_[PER]
GGAACCCCTTCTCCTTCCGGAGCCX_XX_X

Input profile: PA_41_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

1._PA_72_[PER]

93.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

2._PA_72_[PER]

93.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

3._PA_32_[PER]

92.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 253
 Dapeng Zhang, 2014

4._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

6._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

7._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

8._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

9._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

10._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

11._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

13._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

14._CRUZ_7_/14 RUQ_1569

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_71_[PER] RUQ_1564

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

22._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

23._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

25._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._PA_171_[PER]

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 467
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520