SNP Profiles matching PA 72 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAAACGTCCACAGCCAAGGAGACCTGT
1._PA_72_[PER]___
GGAAACGTCCACAGCCAAGGAAACCTGT
2._PA_72_[PER]___
GGAAACGTCCACAGCCAAGGAAACCTGT
3._PA_32_[PER]___
GGAAACGTCCACGGCCAAGGAAACCTGT
4._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
5._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
6._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
7._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
8._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
9._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
10._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
11._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
12._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
13._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
14._CRUZ_7_/14___
____ACGGCCAAAGCCAA__AAACCTGT
15._PA_71_[PER]___
____ACGGCCAAAGCCAA__AAACCTGT
16._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
17._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
18._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
19._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
20._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
21._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
22._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
23._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
24._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
25._PA_72_[PER]___
GGAAACGTCCAAAGCCAAGGAAACCTGT
26._PA_171_[PER]___
GGAAACGTCCAAAGCCAAGGAGAACTTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CGCCTTAATTGGCCCCCCGGAACTAGCC
1._PA_72_[PER]___
CGCCTTAATTGGCCCCCTGGAACTAGCC
2._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
3._PA_32_[PER]___
CGCCTTAATTGGCCCCCCCGAACTAACC
4._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
5._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
6._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
7._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
8._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
9._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
10._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
11._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
12._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
13._PA_72_[PER]___
CGCCTTAA__GG__CCCTGGAACTAGCC
14._CRUZ_7_/14___
CGCCTT____GGCCCC________AGCC
15._PA_71_[PER]___
CGCCTT____GGCCCC________AGCC
16._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
17._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
18._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
19._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
20._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
21._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
22._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
23._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
24._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
25._PA_72_[PER]___
CGCCTTAAGGGGCCCCCTGGAACTAGCC
26._PA_171_[PER]___
CGACTTAATTGGCCCCCCCGAACCAACC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
GGAACCCCTTCTACTTCCGGAGCCX_XX_X
1._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
2._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
3._PA_32_[PER]___
AGAACCCCTTCTACTTCTGGAGCCX_XX_X
4._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
5._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
6._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
7._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
8._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
9._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
10._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
11._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
12._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
13._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
14._CRUZ_7_/14___
________TT______CCCGAG__X_XX_X
15._PA_71_[PER]___
________TT______CCCGAG__X_XX_X
16._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
17._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
18._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
19._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
20._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
21._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
22._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
23._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
24._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
25._PA_72_[PER]___
GGAACCCCTTCCACTTCTGGAGCTX_XX_X
26._PA_171_[PER]___
GGAACCCCTTCTCCTTCCGGAGCCX_XX_X

Input profile: PA_41_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 667
 Dapeng Zhang, 2014

1._PA_72_[PER]

93.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

2._PA_72_[PER]

93.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

3._PA_32_[PER]

92.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 253
 Dapeng Zhang, 2014

4._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

5._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

6._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

7._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

8._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

9._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

10._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

11._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

13._PA_72_[PER]

92.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

14._CRUZ_7_/14 RUQ_1569

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_71_[PER] RUQ_1564

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._PA_72_[PER] GC-08-051-1-62

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._PA_171_[PER]

90 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 467
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520