SNP Profiles matching PA 293 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATACGTCCAACCGGCCAAGGAAAACT
1._PA_293_[PER]
GGATACGTCCAACCGGCCAAGGAAAACT
2._RUQ_34
____ACGGCTAACCGGCCAA__AAAACT
3._RUQ_37
____CCGGCCAACCGGCCAA__AAACCT
4._RUQ_952
____ACGTCTAACCGGCCAA__AAAACT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCGACTTAATTGGCCCCTTCCAATTAG
1._PA_293_[PER]
GTCGACTTAATTGGCCCCTTCCAATTAG
2._RUQ_34
GTCGACCT____GGCCCC________AG
3._RUQ_37
GTCGACTT____GGCCCC________AA
4._RUQ_952
GGCGCCTT____GGCCCC________AG
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CCAGAACCCCTTCTACTTCTCGGGTTX_X
1._PA_293_[PER]
CCAGAACCCCTTCTACTTCTCGGGTTX_X
2._RUQ_34
CC________TT______CTCGGG__X_X
3._RUQ_37
CC________TT______CTCGGG__X_X
4._RUQ_952
CC________TT______CTGGGG__X_X

Input profile: PA_293_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 817
 Dapeng Zhang, 2014

1._PA_293_[PER]

identical
41 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 762
 Dapeng Zhang, 2014

2._PA_88_[PER] RUQ_34

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_175_[PER] RUQ_37

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_289_[PER] RUQ_952

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1144 33TcSNP1165 34TcSNP1253 35TcSNP1270
36TcSNP1350 37TcSNP1414 38TcSNP1442 39TcSNP1458 40TcSNP1484
41TcSNP1520