SNP Profiles matching PA 186 [PER]

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
1._GC-05-137-3-39	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
2._PA_156_[PER]	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
3._PA_156_[PER]	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
4._PA_156_[PER]	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
5._PA_156_[PER]	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
6._RUQ_1531	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
7._PA_156_[PER]	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
8._PA_156_[PER]	GG	AT	AC	GG	_	AA	CC	AA	CC	AA	GG	AA	AC	CC
9._PA_156_[PER]	GG	AT	AC	GG	CC	AA	_	AA	CC	AA	GG	AA	AC	CC
10._RUQ_1531	_	_	AC	GG	CC	AA	CC	AA	CC	AA	_	AA	AC	CC
11._GC-05-137-3-39	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
12._GC-05-137-3-39	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
13._GC-05-137-3-39	GG	AT	AC	GG	CC	AA	CC	AA	CC	AA	GG	AA	AC	CC
14._GC-05-137-3-39	GG	AT	AC	GG	_	AA	CC	AA	CC	AA	GG	AA	AC	CC
15._RUQ_1567	_	_	AC	GG	CC	AA	CC	AA	CC	AA	_	AA	CC	CT
16._EET_400_[ECU]	GG	AT	AC	GG	CT	AC	CC	AA	CC	AA	GG	AA	AC	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CG	CC	TT	AA	TT	GG	CC	CC	TT	CG	AA	CC	AG
1._GC-05-137-3-39	TT	CG	CC	TT	AA	_	GG	CC	CC	TT	CG	AA	CC	AG
2._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
3._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
4._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
5._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
6._RUQ_1531	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
7._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
8._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
9._PA_156_[PER]	TT	CG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CC	AG
10._RUQ_1531	TT	CG	CC	TT	_	_	GG	CC	CC	_	_	_	_	AG
11._GC-05-137-3-39	TT	CG	CC	TT	AA	CC	GG	CC	CC	TT	CG	AA	CC	AG
12._GC-05-137-3-39	TT	CG	CC	TT	AA	CC	GG	CC	CC	TT	CG	AA	CC	AG
13._GC-05-137-3-39	TT	CG	CC	TT	AA	CC	GG	CC	CC	TT	CG	AA	CC	AG
14._GC-05-137-3-39	TT	CG	CC	TT	AA	CC	GG	CC	CC	TT	CG	AA	CC	AG
15._RUQ_1567	TT	CG	AC	TT	_	_	GG	CC	CC	_	_	_	_	AG
16._EET_400_[ECU]	TT	GG	CC	TT	AA	_	GG	_	CC	TT	CG	AA	CT	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41
_Input profile	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
1._GC-05-137-3-39	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
2._PA_156_[PER]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
3._PA_156_[PER]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
4._PA_156_[PER]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
5._PA_156_[PER]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
6._RUQ_1531	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
7._PA_156_[PER]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
8._PA_156_[PER]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
9._PA_156_[PER]	CC	GG	AA	_	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
10._RUQ_1531	CC	_	_	_	_	TT	_	_	_	CT	GG	AG	_	X_X
11._GC-05-137-3-39	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
12._GC-05-137-3-39	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
13._GC-05-137-3-39	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
14._GC-05-137-3-39	CC	GG	AA	CC	CC	TT	TT	CC	TT	CT	GG	AG	CC	X_X
15._RUQ_1567	CC	_	_	_	_	TT	_	_	_	CT	GG	AG	_	X_X
16._EET_400_[ECU]	CC	GG	AA	CC	CC	TT	TT	CC	TT	CC	GG	AG	CC	X_X

Input profile: PA_186_[PER]

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 446

Dapeng Zhang, 2014

1._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP4

2._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 5 > FP

Dapeng Zhang, 2016

3._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 4 > FP

Dapeng Zhang, 2016

4._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 3 > FP

Dapeng Zhang, 2016

5._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 2

Dapeng Zhang, 2016

6._PA_156_[PER] RUQ_1531

identical
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot 1 - Row1 C0184 28

Dapeng Zhang, 2016

8._PA_156_[PER]

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5339 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._PA_156_[PER]

identical
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5A D295 T1

Dapeng Zhang, 2016

10._PA_156_[PER] RUQ_1531

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._PA_156_[PER] GC-05-137-3-39

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

12._PA_156_[PER] GC-05-137-3-39

97.6 %
41 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

13._PA_156_[PER] GC-05-137-3-39

97.6 %
41 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

14._PA_156_[PER] GC-05-137-3-39

97.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

15._PA_39_[PER] RUQ_1567

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

16._EET_400_[ECU]

93.6 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Plot85/Trial II 2B

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP836
21	TcSNP872	22	TcSNP878	23	TcSNP891	24	TcSNP917	25	TcSNP929
26	TcSNP953	27	TcSNP994	28	TcSNP998	29	TcSNP1060	30	TcSNP1062
31	TcSNP1075	32	TcSNP1144	33	TcSNP1165	34	TcSNP1253	35	TcSNP1270
36	TcSNP1350	37	TcSNP1414	38	TcSNP1442	39	TcSNP1458	40	TcSNP1484
41	TcSNP1520