SNP Profiles matching PA 186 [PER]

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 Key

 1234567891011121314
_Input profile
GGATACGGCCAACCAACCAAGGAAACCC
1._GC-05-137-3-39
GGATACGGCCAACCAACCAAGGAAACCC
2._PA_156_[PER]
GGATACGGCCAACCAACCAAGGAAACCC
3._PA_156_[PER]
GGATACGGCCAACCAACCAAGGAAACCC
4._PA_156_[PER]
GGATACGGCCAACCAACCAAGGAAACCC
5._PA_156_[PER]
GGATACGGCCAACCAACCAAGGAAACCC
6._RUQ_1531
GGATACGGCCAACCAACCAAGGAAACCC
7._PA_156_[PER]
GGATACGGCCAACCAACCAAGGAAACCC
8._PA_156_[PER]
GGATACGG__AACCAACCAAGGAAACCC
9._PA_156_[PER]
GGATACGGCCAA__AACCAAGGAAACCC
10._RUQ_1531
____ACGGCCAACCAACCAA__AAACCC
11._GC-05-137-3-39
GGATACGGCCAACCAACCAAGGAAACCC
12._GC-05-137-3-39
GGATACGGCCAACCAACCAAGGAAACCC
13._GC-05-137-3-39
GGATACGGCCAACCAACCAAGGAAACCC
14._GC-05-137-3-39
GGATACGG__AACCAACCAAGGAAACCC
15._RUQ_1567
____ACGGCCAACCAACCAA__AACCCT
16._EET_400_[ECU]
GGATACGGCTACCCAACCAAGGAAACCC
 1516171819202122232425262728
_Input profile
TTCGCCTTAATTGGCCCCTTCGAACCAG
1._GC-05-137-3-39
TTCGCCTTAA__GGCCCCTTCGAACCAG
2._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
3._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
4._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
5._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
6._RUQ_1531
TTCGCCTTAA__GG__CCTTCGAACCAG
7._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
8._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
9._PA_156_[PER]
TTCGCCTTAA__GG__CCTTCGAACCAG
10._RUQ_1531
TTCGCCTT____GGCCCC________AG
11._GC-05-137-3-39
TTCGCCTTAACCGGCCCCTTCGAACCAG
12._GC-05-137-3-39
TTCGCCTTAACCGGCCCCTTCGAACCAG
13._GC-05-137-3-39
TTCGCCTTAACCGGCCCCTTCGAACCAG
14._GC-05-137-3-39
TTCGCCTTAACCGGCCCCTTCGAACCAG
15._RUQ_1567
TTCGACTT____GGCCCC________AG
16._EET_400_[ECU]
TTGGCCTTAA__GG__CCTTCGAACTAG
 29303132333435363738394041 
_Input profile
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
1._GC-05-137-3-39
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
2._PA_156_[PER]
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
3._PA_156_[PER]
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
4._PA_156_[PER]
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
5._PA_156_[PER]
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
6._RUQ_1531
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
7._PA_156_[PER]
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
8._PA_156_[PER]
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
9._PA_156_[PER]
CCGGAA__CCTTTTCCTTCTGGAGCCX_X
10._RUQ_1531
CC________TT______CTGGAG__X_X
11._GC-05-137-3-39
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
12._GC-05-137-3-39
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
13._GC-05-137-3-39
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
14._GC-05-137-3-39
CCGGAACCCCTTTTCCTTCTGGAGCCX_X
15._RUQ_1567
CC________TT______CTGGAG__X_X
16._EET_400_[ECU]
CCGGAACCCCTTTTCCTTCCGGAGCCX_X

Input profile: PA_186_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

1._PA_156_[PER] GC-05-137-3-39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

6._PA_156_[PER] RUQ_1531

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

10._PA_156_[PER] RUQ_1531

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER] GC-05-137-3-39

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

97.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._PA_39_[PER] RUQ_1567

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._EET_400_[ECU]

93.6 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1144 33TcSNP1165 34TcSNP1253 35TcSNP1270
36TcSNP1350 37TcSNP1414 38TcSNP1442 39TcSNP1458 40TcSNP1484
41TcSNP1520