SNP Profiles matching PA 175 [PER]

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 Key

 1234567891011121314
_Input profile
GGATCCGGCCAACCGGCCAAGGAAACCT
1._RUQ_37
GGATCCGGCCAACCGGCCAAGGAAACCT
2._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
3._RUQ_37
____CCGGCCAACCGGCCAA__AAACCT
4._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
5._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
6._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
7._PA_175_[PER]
GGATCCGGCCAACCGGCCAAGGAAACCT
8._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
9._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
10._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
11._NA
GGATCCGGCCAACCGGCCAAGGAAACCT
12._RUQ_32
____CCGGCCACCCAGCCAA__AAACCT
13._PA_46_[PER]
GGATACGGCCAA__GGCCAAGGAAAACT
 1516171819202122232425262728
_Input profile
GTCGACTTAATTGGCCCCCTCGAATTAA
1._RUQ_37
GTCGACTTAA__GG__CCCTCGAATTAA
2._PA_175_[PER]
GTCGACTTAA__GG__CCCTCGAATTAA
3._RUQ_37
GTCGACTT____GGCCCC________AA
4._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
5._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
6._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
7._PA_175_[PER]
GTCGACTTGG__GG__CCCTCGAATTAA
8._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
9._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
10._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
11._NA
GTCGACTTGGCGGGCCCCCTCGAATTAA
12._RUQ_32
GTCGCCTT____GGCCCC________AG
13._PA_46_[PER]
GGCGACTTAATTGGCCCCCTCGAACTAG
 29303132333435363738394041 
_Input profile
CCAGAACCCCTTCCACTTCTCGGGCCX_X
1._RUQ_37
CCAGAACCCCTTCCACTTCTCGGGCCX_X
2._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
3._RUQ_37
CC________TT______CTCGGG__X_X
4._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
5._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
6._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
7._PA_175_[PER]
CCAGAACCCCTTCCACTTCTCGGGCCX_X
8._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
9._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
10._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
11._NA
CCAGAACCCCTTCCACTTCTCGGGCCX_X
12._RUQ_32
CC________TT______CTCGGG__X_X
13._PA_46_[PER]
CCGGAACCCCTTCCACTTCTGGGGCCX_X

Input profile: PA_175_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

1._PA_175_[PER] RUQ_37

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

3._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_46_[PER]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1144 33TcSNP1165 34TcSNP1253 35TcSNP1270
36TcSNP1350 37TcSNP1414 38TcSNP1442 39TcSNP1458 40TcSNP1484
41TcSNP1520