SNP Profiles matching PA 175 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGATCCGGCCAACCGGCCAAGGAAACCT
1._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
2._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
3._PA_175_[PER]___
____CCGGCCAACCGGCCAA__AAACCT
4._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
5._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
6._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
7._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
8._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
9._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
10._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
11._PA_175_[PER]___
GGATCCGGCCAACCGGCCAAGGAAACCT
12._PA_56_[PER]___
____CCGGCCACCCAGCCAA__AAACCT
13._PA_46_[PER]___
GGATACGGCCAA__GGCCAAGGAAAACT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GTCGACTTAATTGGCCCCCTCGAATTAA
1._PA_175_[PER]___
GTCGACTTAA__GG__CCCTCGAATTAA
2._PA_175_[PER]___
GTCGACTTAA__GG__CCCTCGAATTAA
3._PA_175_[PER]___
GTCGACTT____GGCCCC________AA
4._PA_175_[PER]___
GTCGACTTGG__GG__CCCTCGAATTAA
5._PA_175_[PER]___
GTCGACTTGG__GG__CCCTCGAATTAA
6._PA_175_[PER]___
GTCGACTTGG__GG__CCCTCGAATTAA
7._PA_175_[PER]___
GTCGACTTGG__GG__CCCTCGAATTAA
8._PA_175_[PER]___
GTCGACTTGGCGGGCCCCCTCGAATTAA
9._PA_175_[PER]___
GTCGACTTGGCGGGCCCCCTCGAATTAA
10._PA_175_[PER]___
GTCGACTTGGCGGGCCCCCTCGAATTAA
11._PA_175_[PER]___
GTCGACTTGGCGGGCCCCCTCGAATTAA
12._PA_56_[PER]___
GTCGCCTT____GGCCCC________AG
13._PA_46_[PER]___
GGCGACTTAATTGGCCCCCTCGAACTAG
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
CCAGAACCCCTTCCACTTCTCGGGCCX_X
1._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
2._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
3._PA_175_[PER]___
CC________TT______CTCGGG__X_X
4._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
5._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
6._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
7._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
8._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
9._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
10._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
11._PA_175_[PER]___
CCAGAACCCCTTCCACTTCTCGGGCCX_X
12._PA_56_[PER]___
CC________TT______CTCGGG__X_X
13._PA_46_[PER]___
CCGGAACCCCTTCCACTTCTGGGGCCX_X

Input profile: PA_175_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

1._PA_175_[PER] RUQ_37

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

3._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016

5._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

6._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

7._PA_175_[PER]

97.4 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

8._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._PA_175_[PER] NA

95.1 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_46_[PER]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP836
21TcSNP872 22TcSNP878 23TcSNP891 24TcSNP917 25TcSNP929
26TcSNP953 27TcSNP994 28TcSNP998 29TcSNP1060 30TcSNP1062
31TcSNP1075 32TcSNP1144 33TcSNP1165 34TcSNP1253 35TcSNP1270
36TcSNP1350 37TcSNP1414 38TcSNP1442 39TcSNP1458 40TcSNP1484
41TcSNP1520