SNP Profiles matching PA 128 [PER]

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 Key

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_Input profile
GGATACGGCCACAGCCAAGGAAAACCGT
1._PA_52_[PER]
GGATACGGCCACAACCAAGGAAAACCGT
2._RUQ_1436
____CCGGCCACAGCCAA__AAACCCGT
3._MARPER_27
__AT__GG____GGCC__GGAAAACC__
4._RUQ_1642
GGATACGGCCCCGGCCAAGGAAAACCGG
5._RUQ_1642
GGATACGGCCCCGGCCAAGGAAAACCGG
6._PA_195_[PER]
GGATACGGCCCCGGCCAAGGAAAACCGG
7._RUQ_32
____CCGGCCACAGCCAA__AAACCTGT
8._RUQ_1092
____ACGGCTACAGCCAA__AAACCTGG
9._PA_53_[PER]
GGATCCGGCCACAACCAAGGAAAACCGT
10._PA_195_[PER]
GGATACGGCCCCGGCCAAGGAAAACCGG
11._PA_195_[PER]
GGATACGGCCCCGGCCAAGGAAAACCGG
12._PA_195_[PER]
GGATACGGCCCCGGCCAAGGAAAACCGG
13._PA_195_[PER]
GGATACGGCCCCGGCCAAGGAAAACCGG
 1516171819202122232425262728
_Input profile
CGCCTTAATTGGCCCCCCCGAACCAGCC
1._PA_52_[PER]
CGCCTTAATTGGCCCCCC__AA__AACC
2._RUQ_1436
CGCCTT____GGCCCC________AGCC
3._MARPER_27
CG__TTAATT____CC__CGAACCAG__
4._RUQ_1642
CGCCTTAA__GG__CCCCCGAACCAGCC
5._RUQ_1642
CGCCTTAA__GG__CCCCCGAACCAGCC
6._PA_195_[PER]
CGCCTTAA__GG__CCCCCGAACCAGCC
7._RUQ_32
CGCCTT____GGCCCC________AGCC
8._RUQ_1092
CGCCTT____GGCCCC________AGCC
9._PA_53_[PER]
CGACTTAATTGGCCCCCTCGAACCAACC
10._PA_195_[PER]
CGCCTTAG__GG__CCCCCGAACCAGCC
11._PA_195_[PER]
CGCCTTAG__GG__CCCCCGAACCAGCC
12._PA_195_[PER]
CGCCTTAG__GG__CCCCCGAACCAGCC
13._PA_195_[PER]
CGCCTTAG__GG__CCCCCGAACCAGCC
 293031323334353637383940  
_Input profile
AGAACCCCTTCTCCTTCTGGGGCCX_XX_X
1._PA_52_[PER]
GGAA__CCTTCT__TTCTGGGGCCX_XX_X
2._RUQ_1436
________TT______CCGGGG__X_XX_X
3._MARPER_27
AGAA__CC__CCCC__CCCGGGCCX_XX_X
4._RUQ_1642
AGAACCCCTTCCCCTTCCCGGGCCX_XX_X
5._RUQ_1642
AGAACCCCTTCCCCTTCCCGGGCCX_XX_X
6._PA_195_[PER]
AGAA__CCTTCCCCTTCCCGGGCCX_XX_X
7._RUQ_32
________TT______CTCGGG__X_XX_X
8._RUQ_1092
________TT______CTGGGG__X_XX_X
9._PA_53_[PER]
GGAACCCCTTCCCCTTCTGGGGCCX_XX_X
10._PA_195_[PER]
AGAACCCCTTCCCCTTCCCGGGCCX_XX_X
11._PA_195_[PER]
AGAACCCCTTCCCCTTCCCGGGCCX_XX_X
12._PA_195_[PER]
AGAACCCCTTCCCCTTCCCGGGCCX_XX_X
13._PA_195_[PER]
AGAACCCCTTCCCCTTCCCGGGCCX_XX_X

Input profile: PA_128_[PER]

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D272 T2
 Dapeng Zhang, 2014

1._PA_52_[PER]

95.8 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D310 T8
 Dapeng Zhang, 2014

2._MOQ_6_/95 RUQ_1436

93.5 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._MARPER_27

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 491A
 Dapeng Zhang, 2014

4._PA_195_[PER] RUQ_1642

92.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_195_[PER] RUQ_1642

92.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_195_[PER]

91.9 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

7._PA_56_[PER] RUQ_32

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._SLA_16 RUQ_1092

91.3 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PA_53_[PER]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 243
 Dapeng Zhang, 2014

10._PA_195_[PER]

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._PA_195_[PER]

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

12._PA_195_[PER]

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

13._PA_195_[PER]

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP230 8TcSNP242 9TcSNP372 10TcSNP429
11TcSNP469 12TcSNP529 13TcSNP534 14TcSNP560 15TcSNP577
16TcSNP591 17TcSNP619 18TcSNP645 19TcSNP836 20TcSNP872
21TcSNP878 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520