SNP Profiles matching ICS 1

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATGGAACCGGAGCCCTCCCTGGGTTTCC
1._ICS_1___
ATGTAGCTGGAGCCCTCCCTGGGT__CC
2._MARPER_45___
ATGTAGCTGGAGCCTTCCTTGGGTTTCC
3._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
4._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
5._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
6._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
7._ICS_1___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
8._PA_70_[PER]___
ATGTAGCTGGAGCCTTCCTTGGGT__CC
9._ICS_1___
ATGTAGCTGGAGCCTT__TTGGGT__CC
10._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
11._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
12._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
13._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
14._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
15._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
16._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
17._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
18._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
19._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
20._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
21._SLC_24___
ATGTAGCCGGAACCTTCCCT__TT__CC
22._ICS_1___
ATGTAGCTGG__CCTTCCTTGGGT__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27  
_Input profile
GGAATTAGAAAACTCCAACTGGAATTX_X
1._ICS_1___
GGAATTAGAAAACTCCAACTGGAGTTX_X
2._MARPER_45___
GGAATTAGAAAACTCCAACTGGAATTX_X
3._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
4._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
5._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
6._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
7._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
8._PA_70_[PER]___
GGAATTAGAAAACTCCAACTGGAATTX_X
9._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X
10._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
11._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
12._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
13._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
14._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
15._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
16._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
17._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
18._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
19._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
20._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
21._SLC_24___
GGAATTAGAAAACTCCAACTGGAATTX_X
22._ICS_1___
GGAATTAGAAAACTCCAACTGGAATTX_X

Input profile: MARPER_55

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 249
 Dapeng Zhang, 2014

1._ICS_1 RUQ_847

92.3 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._MARPER_45

90.7 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 251A
 Dapeng Zhang, 2014

3._ICS_1

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

4._ICS_1

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

5._ICS_1

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

6._ICS_1

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

7._ICS_1

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016

8._PA_70_[PER]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

9._ICS_1

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

10._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 6
 Dapeng Zhang, 2016

11._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 7
 Dapeng Zhang, 2016

12._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 8
 Dapeng Zhang, 2016

13._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 9
 Dapeng Zhang, 2016

14._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 10
 Dapeng Zhang, 2016

15._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 12
 Dapeng Zhang, 2016

16._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 14
 Dapeng Zhang, 2016

17._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 16
 Dapeng Zhang, 2016

18._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 17
 Dapeng Zhang, 2016

19._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 18
 Dapeng Zhang, 2016

20._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 2 > FP
 Dapeng Zhang, 2016

21._SLC_24

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8216 5 > FP
 Dapeng Zhang, 2016

22._ICS_1

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520