SNP Profiles matching MARPER 50

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 Key

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_Input profile
ATGTAACCAGAAACCTCGCCAGGGTTCT
1._COCA_3310_/3_[CHA]
ATGTAACCAGAGACCTCGCTAGGG_CT
2._COCA_3310_/3_[CHA]
ATGTAACCAGAGACCTCGCTAGGG_CT
3._JA_4_/7_[POU]
ATGTAACCAGAGACCTCGCTAGGG_CT
4._JA_4_/7_[POU]
ATGTAACCAGAGACCTCGCTAGGG_CT
5._JA_4_/7_[POU]
ATGTAACCAGAGACCTCGCTAGGG_CT
6._JA_4_/7_[POU]
ATGTAACCAGAGACCTCGCTAGGG_CT
7._JA_4_/7_[POU]
ATGTAACCAGAGACCTCGCTAGGG_CT
8._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
9._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
10._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
11._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
12._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
13._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
14._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
15._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
16._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
17._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
18._UF_29
ATGTAACCAGAGACCTCGCTAGGG_CT
19._UF_29
ATGTAACC_AGACCTCGCTAGGG_CT
20._UF_29
ATGTAACC_AGACCTCGCTAGGG_CT
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_Input profile
GGAATTAGAGATCTCTAACTCGAACTX_X
1._COCA_3310_/3_[CHA]
GGATTTAGAGATCCCTAACTCGAGCTX_X
2._COCA_3310_/3_[CHA]
GGATTTAGAGATCCCTAACTCGAGCTX_X
3._JA_4_/7_[POU]
GGATTTAAAGATCTCTAACTCGAGCTX_X
4._JA_4_/7_[POU]
GGATTTAAAGATCTCTAACTCGAGCTX_X
5._JA_4_/7_[POU]
GGATTTAAAGATCTCTAACTCGAGCTX_X
6._JA_4_/7_[POU]
GGATTTAAAGATCTCTAACTCGAGCTX_X
7._JA_4_/7_[POU]
GGATTTAAAGATCTCTAACTCGAGCTX_X
8._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
9._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
10._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
11._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
12._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
13._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
14._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
15._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
16._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
17._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
18._UF_29
GGATTTAGAGATCC_AACTCGAGCTX_X
19._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X
20._UF_29
GGATTTAGAGATCCCTAACTCGAGCTX_X

Input profile: MARPER_50

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 790B
 Dapeng Zhang, 2014

1._COCA_3310_/3_[CHA]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5230 2 > FP
 Dapeng Zhang, 2016

2._COCA_3310_/3_[CHA]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5230 1 > FP
 Dapeng Zhang, 2016

3._JA_4_/7_[POU]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 7
 Dapeng Zhang, 2016

4._JA_4_/7_[POU]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 6
 Dapeng Zhang, 2016

5._JA_4_/7_[POU]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 5
 Dapeng Zhang, 2016

6._JA_4_/7_[POU]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 3
 Dapeng Zhang, 2016

7._JA_4_/7_[POU]

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8856 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 3
 Dapeng Zhang, 2016

9._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 7
 Dapeng Zhang, 2016

10._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 8
 Dapeng Zhang, 2016

11._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 10
 Dapeng Zhang, 2016

12._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 13
 Dapeng Zhang, 2016

13._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 15
 Dapeng Zhang, 2016

14._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 16
 Dapeng Zhang, 2016

15._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 14 > F
 Dapeng Zhang, 2016

16._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 4 > FP
 Dapeng Zhang, 2016

17._UF_29

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 6 > FP
 Dapeng Zhang, 2016

18._UF_29

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._UF_29

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 12
 Dapeng Zhang, 2016

20._UF_29

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1115 9 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520