SNP Profiles matching MARPER 42

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 Key

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_Input profile
AAGTAACCGGAAAACCGGTTAAGGTTCC
1._IMC_41
AAGTAACCGGAAAACCGGTTAAGG__CC
2._IMC_41
AAGTAACCGGAAAACCGGTTAAGG__CC
3._IMC_41
AAGTAACCGGAAAACCGGTTAAGG__CC
4._IMC_41
AAGTAACCGGAAAACCGGTTAAGG__CC
5._IMC_41
AAGTAACCGGAAAACCGGTTAAGG__CC
6._IMC_41
AAGTAACCGGAAAACCGGTTAAGG__CC
7._RUQ_1529
__GTAACC__AAAACCGGTT__GG__CC
8._GC-08-275-8-47
AAGTAACCGGAAAACCGGTTAAGGCGCC
9._GC-08-275-8-47
AAGTAACCGGAAAACCGGTTAAGGCGCC
10._GC-08-275-8-47
AAGTAACCGGAAAACCGGTTAAGGCGCC
11._GC-08-275-8-47
AAGTAACCGGAAAACCGGTTAAGGCGCC
12._GC-08-275-8-47
AAGTAACCGGAAAACCGGTTAAGGCGCC
13._RUQ_1616
__GTAACC__AAAACCCGTT__GG__CC
14._MO_9
AAGTAACCGGAACCCTGGTTAAGG__CC
15._MO_9
AAGTAACCGGAACCCTGGTTAAGG__CC
16._MO_9
AAGTAACCGGAACCCTGGTTAAGG__CC
17._MO_9
AAGTAACCGGAACCCTGGTTAAGG__CC
18._MO_9
AAGTAACCGGAACCCTGGTTAAGG__CC
19._MO_9
AAGTAACCGGAACCCTGGTTAAGG__CC
 15161718192021222324252627 
_Input profile
GGAACTAGGGAACCCCACCCCGGGCCX_X
1._IMC_41
GGAACTAGGGAACCCCACCCCGGGCCX_X
2._IMC_41
GGAACTAGGGAACCCCACCCCGGGCCX_X
3._IMC_41
GGAACTAGGGAACCCCACCCCGGGCCX_X
4._IMC_41
GGAACTAGGGAACCCCACCCCGGGCCX_X
5._IMC_41
GGAACTAGGGAACCCCACCCCGGGCCX_X
6._IMC_41
GGAACTAGGGAACCCC__CCCGGGCCX_X
7._RUQ_1529
______AG__________CCCGGG__X_X
8._GC-08-275-8-47
GGAACTAGGGAACCCCACCCCGGGCCX_X
9._GC-08-275-8-47
GGAACTAGGGAACCCCACCCCGGGCCX_X
10._GC-08-275-8-47
GGAACTAGGGAACCCCACCCCGGGCCX_X
11._GC-08-275-8-47
GGAACTAGGGAACCCCACCCCGGGCCX_X
12._GC-08-275-8-47
GGAACTAGGGAACCCCACCCCGGGCCX_X
13._RUQ_1616
______AG__________CCCGAG__X_X
14._MO_9
CGAACTAGGGAACCCCACCTCGGGCCX_X
15._MO_9
CGAACTAGGGAACCCCACCTCGGGCCX_X
16._MO_9
CGAACTAGGGAACCCCACCTCGGGCCX_X
17._MO_9
CGAACTAGGGAACCCCACCTCGGGCCX_X
18._MO_9
CGAACTAGGGAACCCCACCTCGGGCCX_X
19._MO_9
CGAACTAGGGAACCCCACCTCGGGCCX_X

Input profile: MARPER_42

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 713
 Dapeng Zhang, 2014

1._IMC_41

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 5
 Dapeng Zhang, 2016

2._IMC_41

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 4
 Dapeng Zhang, 2016

3._IMC_41

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 3
 Dapeng Zhang, 2016

4._IMC_41

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 2
 Dapeng Zhang, 2016

5._IMC_41

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8847 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._IMC_41

identical
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F418 T1
 Dapeng Zhang, 2016

7._MO_4 RUQ_1529

identical
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._IMC_41 GC-08-275-8-47

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._IMC_41 GC-08-275-8-47

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._IMC_41 GC-08-275-8-47

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._IMC_41 GC-08-275-8-47

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

12._IMC_41 GC-08-275-8-47

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._GEBP_165_/A-M_[ADI] RUQ_1616

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._MO_9

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

15._MO_9

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

16._MO_9

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

17._MO_9

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

18._MO_9

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._MO_9

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520