SNP Profiles matching NA 168

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTGGAGCTGGAACCCCGGCCAAGGTTCC
1._ICS_39___
TTGGAGCTGGAACCCCGGCCAAGG__CC
2._NA_26___
__GGAGCT__AACCCTGGCC__GG__CC
3._NA_33___
__GGAGCT__AACCCTGGCT__GG__CC
4._PNG_340___
__GGAGCT__AACCCCGGCT__GG__CC
5._GU_255_/P___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
6._GU_255_/P___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
7._GU_255_/P___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
8._GU_255_/P___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
9._GU_255_/P___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
10._NA_168___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
11._NA_168___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
12._NA_168___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
13._NA_168___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
14._NA_168___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
15._NA_168___
TTGGAGCTGGAGCCCCGGCCAAGG__CT
16._NA_670___
TTGGAGCCGGAACCCTGGCCAAGG__CC
17._NA_670___
TTGGAGCCGGAACCCTGGCCAAGG__CC
18._NA_670___
TTGGAGCCGGAACCCTGGCCAAGG__CC
19._NA_670___
TTGGAGCCGGAACCCTGGCCAAGG__CC
20._NA_670___
TTGGAGCCGGAACCCTGGCCAAGG__CC
21._NA_670___
TTGGAGCCGGAACCCTGGCCAAGG__CC
 15 16 17 18 19 20 21 22 23 24 25 26 27  
_Input profile
GGATTTAGAGAACCTTAATTCCAACCX_X
1._ICS_39___
GGATTTAGAGAACCTTACTTCCAGCCX_X
2._NA_26___
______AG__________TTCGAA__X_X
3._NA_33___
______AG__________TTCCAA__X_X
4._PNG_340___
______AG__________TTCCAG__X_X
5._GU_255_/P___
GGATTTAGGGAACCTTAATTCGAACCX_X
6._GU_255_/P___
GGATTTAGGGAACCTTAATTCGAACCX_X
7._GU_255_/P___
GGATTTAGGGAACCTTAATTCGAACCX_X
8._GU_255_/P___
GGATTTAGGGAACCTTAATTCGAACCX_X
9._GU_255_/P___
GGATTTAGGGAACCTTAATTCGAACCX_X
10._NA_168___
GGATTTAGGGAACCTTAATTCGAACCX_X
11._NA_168___
GGATTTAGGGAACCTTAATTCGAACCX_X
12._NA_168___
GGATTTAGGGAACCTTAATTCGAACCX_X
13._NA_168___
GGATTTAGGGAACCTTAATTCGAACCX_X
14._NA_168___
GGATTTAGGGAACCTTAATTCGAACCX_X
15._NA_168___
GGATTTAGGGAACCTTAATTCGAACCX_X
16._NA_670___
GGAATTAGAGAACTTTAATTCCAGCCX_X
17._NA_670___
GGAATTAGAGAACTTTAATTCCAGCCX_X
18._NA_670___
GGAATTAGAGAACTTTAATTCCAGCCX_X
19._NA_670___
GGAATTAGAGAACTTTAATTCCAGCCX_X
20._NA_670___
GGAATTAGAGAACTTTAATTCCAGCCX_X
21._NA_670___
GGAATTAGAGAACTTTAATTCCAGCCX_X

Input profile: MARPER_37

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 661
 Dapeng Zhang, 2014

1._ICS_39 RUQ_1089

96.2 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._NA_26 RUQ_1230

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._NA_33 RUQ_1577

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PNG_340 RUQ_1304

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._GU_255_/P

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 9
 Dapeng Zhang, 2016

6._GU_255_/P

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 6
 Dapeng Zhang, 2016

7._GU_255_/P

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 4
 Dapeng Zhang, 2016

8._GU_255_/P

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 3
 Dapeng Zhang, 2016

9._GU_255_/P

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8854 1
 Dapeng Zhang, 2016

10._NA_168

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

11._NA_168

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

12._NA_168

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

13._NA_168

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

14._NA_168

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

15._NA_168

92.3 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016

16._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 5 > FP
 Dapeng Zhang, 2016

17._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 4 > FP
 Dapeng Zhang, 2016

18._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 3 > FP
 Dapeng Zhang, 2016

19._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 2 > FP
 Dapeng Zhang, 2016

20._NA_670 RUQ_1238

90.4 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

21._NA_670

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D317 T4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520