SNP Profiles matching MARPER 28

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 Key

 1234567891011121314
_Input profile
TTGGAACCGGAACCTTGGCCAAGGTTCC
1._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
2._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
3._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
4._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
5._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
6._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
7._POUND_2_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
8._POUND_25_/A
TTGGAACCGGAACCTTGGCCAAGG__CC
9._RUQ_1504
__GGAACC__AACCTTGGCC__GG__CC
10._RUQ_1334
__GGAGCC__AACCTTGGCC__GG__CC
11._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
12._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
13._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
14._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
15._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
16._GC-01-093-5-10
TTGGAACCGGAACCTTGGCCAAGGGGCC
17._MARPER_38
TTGGAACCGGAACCCTGGCCAAGGTTCC
18._MARPER_16
TTGGGGCCGGAACCTTGGCCAAGGTTCC
19._RUQ_897
__GGAACC__AACCCTGGCC__GG__CC
20._RUQ_1588
__GGAACC__AACCTTGGCC__GG__CC
21._MATINA_2_/8
TTGGAACTGGAACCTTGGCCAA__TTCC
22._NA_286
TTGGAACCGGAACCCCGGCCAAGG__CC
23._NA_286
TTGGAACCGGAACCCCGGCCAAGG__CC
24._NA_670
TTGGAGCCGGAACCCTGGCCAAGG__CC
25._NA_670
TTGGAGCCGGAACCCTGGCCAAGG__CC
26._NA_670
TTGGAGCCGGAACCCTGGCCAAGG__CC
27._NA_670
TTGGAGCCGGAACCCTGGCCAAGG__CC
28._RUQ_1238
TTGGAGCCGGAACCCTGGCCAAGG__CC
29._NA_670
TTGGAGCCGGAACCCTGGCCAAGG__CC
30._SPA_9_[COL]
TTGGAACTGGAACCTTGGCCAAGG__CC
31._IMC_96
ATGGAGCCGGAACCCTGGCCAAGG____
32._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG__CC
33._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG__CC
34._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG__CC
35._POUND_5_/C
TTGGAGCCGGAACCCTGGCCAAGG__CC
36._NA_168
ATGGAACCGGAGCCTTGGCCAAGG__CC
 15161718192021222324252627 
_Input profile
GGAATTGGAGAACCTTAATTCCAACCX_X
1._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
2._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
3._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
4._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
5._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
6._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
7._POUND_2_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
8._POUND_25_/A
GGAATTGGAGAACCTTAATTCCAACCX_X
9._RUQ_1504
______AG__________TTCCAA__X_X
10._RUQ_1334
______GG__________TTCCAA__X_X
11._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
12._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
13._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
14._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
15._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
16._GC-01-093-5-10
GGAATTGGAGAACCTTAATTCCAACCX_X
17._MARPER_38
GGAATTGGAGAACCTTAATTCGAACCX_X
18._MARPER_16
GGAATTGGAA__CCTTAATTCC__CCX_X
19._RUQ_897
______GG__________TTCGAA__X_X
20._RUQ_1588
______AG__________TTCGAA__X_X
21._MATINA_2_/8
GGAATTAGGGAACCTTAATTCGAACCX_X
22._NA_286
GGAATTGGAAAACCTTAATTGGAACCX_X
23._NA_286
GGAATTGGAAAACCTTAATTGGAACCX_X
24._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
25._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
26._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
27._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
28._RUQ_1238
GGAATTAGAGAACTTTAATTCCAGCCX_X
29._NA_670
GGAATTAGAGAACTTTAATTCCAGCCX_X
30._SPA_9_[COL]
GGAATTAGGGAACCTTACTTCGAACCX_X
31._IMC_96
GGAATTGGGGAACCTTAATTCGAACCX_X
32._POUND_5_/C
GGAATTGGGGAACCTT__TTGGAACCX_X
33._POUND_5_/C
GGAATTGGGGAACCTT__TTGGAACCX_X
34._POUND_5_/C
GGAATTGGGGAACCTT__TTGGAACCX_X
35._POUND_5_/C
GGAATTGGGGAACCTT__TTGGAACCX_X
36._NA_168
GGAATTAGGGAACCTTAATTCCAG__X_X

Input profile: MARPER_28

 
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 647A
 Dapeng Zhang, 2014

1._POUND_2_/A

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._POUND_2_/A

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

3._POUND_2_/A

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

4._POUND_2_/A

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

5._POUND_2_/A

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

6._POUND_2_/A

identical
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

8._POUND_25_/A

identical
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

9._NA_232 RUQ_1504

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._NA_916 RUQ_1334

96.4 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._POUND_2_/A GC-01-093-5-10

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._POUND_2_/A GC-01-093-5-10

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._POUND_2_/A GC-01-093-5-10

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._POUND_2_/A GC-01-093-5-10

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

15._POUND_2_/A GC-01-093-5-10

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

16._POUND_2_/A GC-01-093-5-10

96.3 %
27 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._MARPER_38

96.3 %
27 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 167
 Dapeng Zhang, 2014

18._MARPER_16

94 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 750A
 Dapeng Zhang, 2014

19._CRU_70 RUQ_897

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_710 RUQ_1588

92.9 %
14 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._MATINA_2_/8

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B106 T16
 Dapeng Zhang, 2014

22._NA_286

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

23._NA_286

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

24._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 5 > FP
 Dapeng Zhang, 2016

25._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 4 > FP
 Dapeng Zhang, 2016

26._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 3 > FP
 Dapeng Zhang, 2016

27._NA_670

90.4 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 2 > FP
 Dapeng Zhang, 2016

28._NA_670 RUQ_1238

90.4 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._NA_670

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D317 T4
 Dapeng Zhang, 2016

30._SPA_9_[COL]

90.4 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

31._IMC_96

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8823 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

32._POUND_5_/C

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

33._POUND_5_/C

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

34._POUND_5_/C

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

35._POUND_5_/C

90 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

36._NA_168

90 %
25 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F493 T5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP32 2TcSNP150 3TcSNP230 4TcSNP242 5TcSNP429
6TcSNP469 7TcSNP529 8TcSNP534 9TcSNP577 10TcSNP619
11TcSNP645 12TcSNP723 13TcSNP836 14TcSNP891 15TcSNP929
16TcSNP953 17TcSNP994 18TcSNP998 19TcSNP1062 20TcSNP1075
21TcSNP1165 22TcSNP1270 23TcSNP1350 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP1520