SNP Profiles matching EET 400 [ECU]

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 Key

 1234567891011121314
_Input profile
CTCCACGTCTCCCCAGCTAGGGAACCAG
1._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
2._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
3._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
4._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
5._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
6._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
7._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
8._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
9._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
10._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
11._POUND_10_/B
____ACGTCTCCCCAGCT____AA__AG
12._EET_400_[ECU]
____ACGTCTCCCCAGCT____AA__AG
13._POUND_10_/B
____ACGTCTCCCCAGCT________AG
14._RUQ_760
____ACGTCTCCCCAGCT____AA__AG
15._GC-01-066-4-02
CTCCACGTCTCCCCAGCTAGGGAACGAG
16._GC-01-066-4-02
CTCCACGTCTCCCCAGCTAGGGAACGAG
17._GC-01-066-4-02
CTCCACGTCTCCCCAGCTAGGGAACGAG
18._GC-01-115-6-12
CTCCACGTCTCCCCAGCTAGGGAACGAG
19._GC-01-115-6-12
CTCCACGTCTCCCCAGCTAGGGAACGAG
20._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGGAACGAG
21._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGGAACGAG
22._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGGAACGAG
23._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGGAACGAG
24._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGGAACGAG
25._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGGAACGAG
26._GC-08-162-4-05
CTCCACGTCTCCCCAGCTAGGG__CGAG
27._EET_400_[ECU]
____ACGTCTCC__AGCC____AA__AG
 1516171819202122232425262728
_Input profile
ACCTGGCGACCCCTTTGGAGTTACCGCC
1._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
2._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
3._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
4._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
5._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
6._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
7._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
8._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
9._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
10._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
11._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
12._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
13._POUND_10_/B
ACCTGGGGAC__CT__GG______CG__
14._RUQ_760
ACCTGGGGAC__CT__GG______CG__
15._GC-01-066-4-02
ACCTGGGGACCCCTCTGGAGTTACCGCG
16._GC-01-066-4-02
ACCTGGGGACCCCTCTGGAGTTACCGCG
17._GC-01-066-4-02
ACCTGGGGACCCCTCTGGAGTTACCGCG
18._GC-01-115-6-12
ACCTGGGGACCCCTCTGGAGTTACCGCG
19._GC-01-115-6-12
ACCTGGGGACCCCTCTGGAGTTACCGCG
20._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
21._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
22._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
23._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
24._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
25._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
26._GC-08-162-4-05
ACCTGGGGACCCCTCTGGAGTTACCGCG
27._EET_400_[ECU]
ACCTGGGGAC__CT__GG______CG__
 29303132333435363738394041 
_Input profile
TTAACCCCGGGGTTGTCCCCTTCCAGX_X
1._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
2._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
3._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
4._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
5._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
6._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
7._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
8._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
9._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
10._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
11._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
12._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X
13._POUND_10_/B
CTAA__CC______GT____TTCCAGX_X
14._RUQ_760
CTAG__CC______GT____TTCCAGX_X
15._GC-01-066-4-02
CTAACCCCGGGGTTGT__CCTTCCAGX_X
16._GC-01-066-4-02
CTAACCCCGGGGTTGT__CCTTCCAGX_X
17._GC-01-066-4-02
CTAACCCCGGGGTTGT__CCTTCCAGX_X
18._GC-01-115-6-12
CTAACCCCGGGGTTGT__CCTTCCAGX_X
19._GC-01-115-6-12
CTAACCCCGGGGTTGT__CCTTCCAGX_X
20._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
21._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
22._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
23._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
24._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
25._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
26._GC-08-162-4-05
CTAACCCCGGGGTTGT__CCTTCCAGX_X
27._EET_400_[ECU]
CTAA__CC______GT____TTCCAGX_X

Input profile: EET_400_[ECU] RUQ_760

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

2._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

3._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

5._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

6._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

7._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

8._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

9._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

10._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

11._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

12._EET_400_[ECU]

95.8 %
24 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

13._POUND_10_/B

95.7 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

14._EET_400_[ECU] RUQ_760

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

18._POUND_10_/B GC-01-115-6-12

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

19._POUND_10_/B GC-01-115-6-12

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

25._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._POUND_10_/B GC-08-162-4-05

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_400_[ECU]

93.5 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484