SNP Profiles matching EET 400 [ECU]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTCCACGTCTCCCCAGCTAGGGAACCAG
1._EET_400_[ECU]___
____ACGTCTCCCCAGCT____AA__AG
2._EET_400_[ECU]___
____ACGTCTCCCCAGCT____AA__AG
3._EET_400_[ECU]___
____ACGTCTCCCCAGCT____AA__AG
4._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
5._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
6._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
7._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
8._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
9._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
10._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
11._POUND_10_/B___
____ACGTCTCCCCAGCT____AA__AG
12._EET_400_[ECU]___
____ACGTCTCCCCAGCT____AA__AG
13._POUND_10_/B___
____ACGTCTCCCCAGCT________AG
14._EET_400_[ECU]___
____ACGTCTCCCCAGCT____AA__AG
15._EET_400_[ECU]___
CTCCACGTCTCCCCAGCTAGGGAACGAG
16._EET_400_[ECU]___
CTCCACGTCTCCCCAGCTAGGGAACGAG
17._EET_400_[ECU]___
CTCCACGTCTCCCCAGCTAGGGAACGAG
18._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
19._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
20._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
21._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
22._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
23._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
24._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
25._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGGAACGAG
26._POUND_10_/B___
CTCCACGTCTCCCCAGCTAGGG__CGAG
27._EET_400_[ECU]___
____ACGTCTCC__AGCC____AA__AG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACCTGGCGACCCCTTTGGAGTTACCGCC
1._EET_400_[ECU]___
ACCTGGGGAC__CT__GG______CG__
2._EET_400_[ECU]___
ACCTGGGGAC__CT__GG______CG__
3._EET_400_[ECU]___
ACCTGGGGAC__CT__GG______CG__
4._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
5._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
6._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
7._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
8._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
9._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
10._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
11._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
12._EET_400_[ECU]___
ACCTGGGGAC__CT__GG______CG__
13._POUND_10_/B___
ACCTGGGGAC__CT__GG______CG__
14._EET_400_[ECU]___
ACCTGGGGAC__CT__GG______CG__
15._EET_400_[ECU]___
ACCTGGGGACCCCTCTGGAGTTACCGCG
16._EET_400_[ECU]___
ACCTGGGGACCCCTCTGGAGTTACCGCG
17._EET_400_[ECU]___
ACCTGGGGACCCCTCTGGAGTTACCGCG
18._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
19._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
20._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
21._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
22._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
23._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
24._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
25._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
26._POUND_10_/B___
ACCTGGGGACCCCTCTGGAGTTACCGCG
27._EET_400_[ECU]___
ACCTGGGGAC__CT__GG______CG__
 29 30 31 32 33 34 35 36 37 38 39 40 41  
_Input profile
TTAACCCCGGGGTTGTCCCCTTCCAGX_X
1._EET_400_[ECU]___
CTAA__CC______GT____TTCCAGX_X
2._EET_400_[ECU]___
CTAA__CC______GT____TTCCAGX_X
3._EET_400_[ECU]___
CTAA__CC______GT____TTCCAGX_X
4._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
5._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
6._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
7._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
8._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
9._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
10._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
11._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
12._EET_400_[ECU]___
CTAA__CC______GT____TTCCAGX_X
13._POUND_10_/B___
CTAA__CC______GT____TTCCAGX_X
14._EET_400_[ECU]___
CTAG__CC______GT____TTCCAGX_X
15._EET_400_[ECU]___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
16._EET_400_[ECU]___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
17._EET_400_[ECU]___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
18._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
19._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
20._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
21._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
22._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
23._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
24._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
25._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
26._POUND_10_/B___
CTAACCCCGGGGTTGT__CCTTCCAGX_X
27._EET_400_[ECU]___
CTAA__CC______GT____TTCCAGX_X

Input profile: EET_400_[ECU] RUQ_760

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

2._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

3._EET_400_[ECU]

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016

4._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 10
 Dapeng Zhang, 2016

5._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 2 > FP
 Dapeng Zhang, 2016

6._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 2
 Dapeng Zhang, 2016

7._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 4
 Dapeng Zhang, 2016

8._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 5
 Dapeng Zhang, 2016

9._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 6
 Dapeng Zhang, 2016

10._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 8
 Dapeng Zhang, 2016

11._POUND_10_/B

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 10
 Dapeng Zhang, 2016

12._EET_400_[ECU]

95.8 %
24 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

13._POUND_10_/B

95.7 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 11
 Dapeng Zhang, 2016

14._EET_400_[ECU] RUQ_760

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

18._POUND_10_/B GC-01-115-6-12

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

19._POUND_10_/B GC-01-115-6-12

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

25._POUND_10_/B GC-08-162-4-05

93.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

26._POUND_10_/B GC-08-162-4-05

93.6 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

27._EET_400_[ECU]

93.5 %
23 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP448 14TcSNP469 15TcSNP529
16TcSNP534 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484