SNP Profiles matching EET 272 [ECU]**

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGAACCAACTAGGGAACC
1._RUQ_1534
TTCCACGGCTGGAACCAACTAGGGAACC
2._RUQ_24
TTCCACGGCTGGAACCAACTAGGGAACC
3._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
4._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
5._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
6._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
7._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
8._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
9._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
10._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
11._POUND_7_/B
____ACGGCT__AACCAACT____AA__
12._POUND_7_/B
____ACGGCT__AACCAACT____AA__
13._POUND_7_/B
____ACGGCT__AACCAACT____AA__
14._POUND_7_/B
____ACGGCT__AACCAACT____AA__
15._POUND_7_/B
____ACGGCT__AACCAACT____AA__
16._POUND_7_/B
____ACGGCT__AACCAACT____AA__
17._POUND_7_/B
____ACGGCT__AACCAACT____AA__
18._POUND_7_/B
____ACGGCT__AACCAACT____AA__
19._PA_150_[PER]
____ACGGCT__AACCAACT____AA__
20._POUND_7_/B
____ACGGCT__AACCAACT____AA__
21._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
22._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
23._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
24._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
25._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
26._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
27._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
28._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
29._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
30._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
31._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
32._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
33._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
34._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
35._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
36._RUQ_1231
TTCCACGGCCGGAACCAACTAGGGAACC
37._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
38._RUQ_24
____ACGGCT__AACCAACT____AA__
39._RUQ_1651
TTCCACGGCTGGAA__AACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGTGGAACCCTTTGGGGTTACCC
1._RUQ_1534
AACCCTGTGGAACCCTTTGGGGTTACCC
2._RUQ_24
AACCCTGTGGAACCCTTTGGGGTTACCC
3._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
4._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
5._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
6._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
7._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
8._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
9._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
10._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
11._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
12._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
13._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
14._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
15._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
16._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
17._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
18._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
19._PA_150_[PER]
AACCCTGTGGAA__CT__GG______CC
20._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
21._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
22._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
23._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
24._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
25._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
26._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
27._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
28._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
29._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
30._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
31._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
32._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
33._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
34._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
35._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
36._RUQ_1231
AACCCCGTGGAACCCTTTGGGGTTACCC
37._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
38._RUQ_24
AACCCTGTGGAA__CT__GG______CC
39._RUQ_1651
AACCTTGT__AACC__TT__GGTTCCCG
 29303132333435363738394041 
_Input profile
CCTTAGCTGGGGTTTTTTCCTTCCAAX_X
1._RUQ_1534
CCTTAGCTGGGGTTTTTTCCTTCCAAX_X
2._RUQ_24
CC__AGCTGGGGTTTTTTCCTTCCAAX_X
3._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
4._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
5._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
6._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
7._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
8._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
9._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
10._EET_272_[ECU]
__CTAGCT______TT____TTCCAAX_X
11._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
12._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
13._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
14._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
15._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
16._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
17._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
18._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
19._PA_150_[PER]
__CTAGCT______TT____TTCCAAX_X
20._POUND_7_/B
__CTAGCT______TT____TTCCAAX_X
21._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
22._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
23._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
24._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
25._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
26._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
27._GC-03-032-3-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
28._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
29._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
30._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
31._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
32._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
33._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
34._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
35._GC-01-114-6-11
CCCTAGCTGGGGTTTTTTCCTTCCAAX_X
36._RUQ_1231
CCTTAGCCGGGGTTTTTTCCTTCCAAX_X
37._GC-03-032-3-11
CCCTAGCTGGGGTTTT__CCTTCCAAX_X
38._RUQ_24
__CTAGCT______TT____TTCCAGX_X
39._RUQ_1651
__TT__CTGGGG__TT__CCTT____X_X

Input profile: EET_272_[ECU] RUQ_6

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._TRD_32 RUQ_1534

identical
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._POUND_7_/B RUQ_24

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

4._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

5._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

6._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

8._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

9._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

10._EET_272_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

13._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

14._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

15._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

16._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

17._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

18._POUND_7_/B

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

19._PA_150_[PER]

97.9 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

20._POUND_7_/B

97.9 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

21._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

24._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

26._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

28._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

29._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

32._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

33._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

34._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

35._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

36._LZ_8 RUQ_1231

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

37._EET_272_[ECU] GC-03-032-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

38._POUND_7_/B RUQ_24

95.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

39._GEBP_450_/A-F_[ADI] RUQ_1651

91.9 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484