SNP Profiles matching CRU 70

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
2._RUQ_801
TTCCCCGGCCGGAACCAACCGGGGAACC
3._RUQ_1587
TTCCCCGGCCGGAACCAACCGGGGAACC
4._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
5._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
6._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
7._NA_286
__CCGGCC_AACCAACC__AA_
8._POUND_2_/A
__CCGGCC_AACCAACC__AA_
9._POUND_2_/A
__CCGGCC_AACCAACC__AA_
10._POUND_2_/A
__CCGGCC_AACCAACC__AA_
11._POUND_2_/A
__CCGGCC_AACCAACC__AA_
12._POUND_2_/A
__CCGGCC_AACCAACC__AA_
13._POUND_2_/A
__CCGGCC_AACCAACC__AA_
14._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
15._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
16._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
17._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
18._NA_286
__CCGGCC_AACCAACC__AA_
19._NA_286
__CCGGCC_AACCAACC__AA_
20._POUND_2_/A
__CCGGCC_AA_AACC__AA_
21._POUND_25_/A
__CCGGCC_AA_AACC__AA_
22._POUND_5_/C
__CCGGCC_AA_AGCC__AA_
23._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
24._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
25._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
26._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
27._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
28._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
29._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
30._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
31._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
32._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
33._RUQ_1504
TTCCCCGGCCGGAACCAACCGGGGAACC
34._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
35._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
36._GC-08-165-4-08
TT_CCGGCCGGAACCAGCCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGGGGAACCCCTTGGGGTTCCGG
1._RUQ_468
AACCCTGGGGAACCCCTTGGGGTTCCGG
2._RUQ_801
AACCCCGGGGAACCCCTTGGGGTTCCGG
3._RUQ_1587
AACCCCGGGGAACCCCTTGGGGTTCCGG
4._RUQ_877
AACC-GGGGAACCCCTTGGGGTTCCCG
5._RUQ_515
AACCTTGGGGAACCCCTTGGGGTTCCGG
6._RUQ_1588
AACCTTGGGGAACCCCTTGGGGTTACGG
7._NA_286
AACCCCGGGGAA_CC_GG___GG
8._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
9._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
10._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
11._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
12._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
13._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
14._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
15._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
16._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
17._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
18._NA_286
AACCCCGGGGAA_CC_GG___GG
19._NA_286
AACCCCGGGGAA_CC_GG___GG
20._POUND_2_/A
AACCTTGGGGAA_CC_GG___GG
21._POUND_25_/A
AACCTTGGGGAA_CC_GG___GG
22._POUND_5_/C
AACCCTGGGGAA_CC_GG___GG
23._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
24._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
25._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
26._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
27._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
28._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
29._GC-01-093-5-10
AACCTTGGGGAACCCCCCGGGGTTCCGG
30._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
31._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
32._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
33._RUQ_1504
AACCTTGGGGAACCCCTTGGGGTTACGG
34._RUQ_1334
AACCTTGGGGAACCCCTTGGGGTTCCCG
35._GC-01-101-5-18
AACCCCGGGGAACCCCCCGGGGTTCCGG
36._GC-08-165-4-08
AACCCTGGGGAACCCCCCGGGGTTCCGG
 2930313233343536373839404142
_Input profile
CCCCGGCCCCGGGGTTTTTTCCTTCGAA
1._RUQ_468
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
2._RUQ_801
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
3._RUQ_1587
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
4._RUQ_877
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
5._RUQ_515
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
6._RUQ_1588
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
7._NA_286
_CCGG_CC___TT__TTGGAA
8._POUND_2_/A
_CCGG_CC___TT__TTCCAA
9._POUND_2_/A
_CCGG_CC___TT__TTCCAA
10._POUND_2_/A
_CCGG_CC___TT__TTCCAA
11._POUND_2_/A
_CCGG_CC___TT__TTCCAA
12._POUND_2_/A
_CCGG_CC___TT__TTCCAA
13._POUND_2_/A
_CCGG_CC___TT__TTCCAA
14._POUND_5_/C
_CCGG_CC___TT__TTGGAA
15._POUND_5_/C
_CCGG_CC___TT__TTGGAA
16._POUND_5_/C
_CCGG_CC___TT__TTGGAA
17._POUND_5_/C
_CCGG_CC___TT__TTGGAA
18._NA_286
_CCGG_CC___TT__TTGGAA
19._NA_286
_CCGG_CC______TTGGAA
20._POUND_2_/A
_CCGG_CC___TT__TTCCAA
21._POUND_25_/A
_CCGG_CC___TT__TTCCAA
22._POUND_5_/C
_CCGG_CC___TT__TTGGAA
23._GC-01-101-5-18
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
24._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
25._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
26._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
27._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
28._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
29._GC-01-093-5-10
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
30._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
31._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
32._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA
33._RUQ_1504
CCCCAGCCCCGGGGTTTTTTCCTTCCAA
34._RUQ_1334
CCCCGGCCCCGGGGTTTTTTCCTTCCAA
35._GC-01-101-5-18
CCCCGGCCCCGGGGTT_TTCCTTGGAA
36._GC-08-165-4-08
CCCCGGCCCCGGGGTTTTTTCCTTGGAA

Input profile: CRU_70 RUQ_897

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_756 RUQ_468

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._NA_149 RUQ_801

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._NA_702 RUQ_1587

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._CRU_100 RUQ_877

97.6 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._IMC_27 RUQ_515

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._NA_710 RUQ_1588

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._NA_286

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

10._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

11._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

12._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

13._POUND_2_/A

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

14._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

15._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

16._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

17._POUND_5_/C

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

18._NA_286

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

19._NA_286

95.7 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

20._POUND_2_/A

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

21._POUND_25_/A

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

22._POUND_5_/C

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

23._NA_286 GC-01-101-5-18

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

24._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

25._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

27._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

28._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

29._POUND_2_/A GC-01-093-5-10

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

30._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

31._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

95.2 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

33._NA_232 RUQ_1504

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

34._NA_916 RUQ_1334

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

35._NA_286 GC-01-101-5-18

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

36._POUND_5_/C GC-08-165-4-08

95.1 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484