SNP Profiles matching CRU 101

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 Key

 1234567891011121314
_Input profile
TTCCCCTTTTGGAACCAACCGGGGAACC
1._CRU_101
__CCTTTT_AACCAACC__AA_
2._CRU_101
__CCTTTT_AACCAACC__AA_
3._CRU_101
__CCTTTT_AACCAACC__AA_
4._CRU_101
__CCTTTT_AACCAACC__AA_
5._CRU_101
__CCTTTT_AACCAACC__AA_
6._PA_121_[PER]
__CCTTTT_AACCAACC__AA_
7._CRU_101
__CCTTTT_AA_AACC__AA_
8._GC-05-164-4-17
TTCCCCTTTTGGAACCAACCGGGGAACC
9._GC-05-011-1-11
TTCCCCTTTTGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AGCCTTGTCCCCTTTTCTGGAGTTAAGG
1._CRU_101
AGCCTTGTCCCC_TT_GG___GG
2._CRU_101
AGCCTTGTCCCC_TT_GG___GG
3._CRU_101
AGCCTTGTCCCC_TT_GG___GG
4._CRU_101
AGCCTTGTCCCC_TT_GG___GG
5._CRU_101
AGCCTTGTCCCC_TT_GG___GG
6._PA_121_[PER]
AGCCTTGTCCCC_TT_GG___GG
7._CRU_101
AGCCTTGTCCCC_TT_GG___GG
8._GC-05-164-4-17
AGCCTTGTCCCCTTTTCCGGAGTTAAGG
9._GC-05-011-1-11
AGCCTTGTCCCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CGCCAAAGTTCCGGAATTTTCCTTCTCG
1._CRU_101
_CC_AG_CC___TT__CTCG
2._CRU_101
_CC_AG_CC___TT__CTCG
3._CRU_101
_CC_AG_CC___TT__CTCG
4._CRU_101
_CC_AG_CC___TT__CTCG
5._CRU_101
_CC_AG_CC___TT__CTCG
6._PA_121_[PER]
_CC_AG_CC___TT__CTCG
7._CRU_101
_CC_AG_____TT__CTCG
8._GC-05-164-4-17
CGCCAAAGTTCCGGAATTTT_TTCTCG
9._GC-05-011-1-11
CGCCAAAGTTCCGGAATTTTTTTTCTCG
 43             
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._CRU_101
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._CRU_101
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._CRU_101
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._CRU_101
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._CRU_101
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_121_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._CRU_101
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-05-164-4-17
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-05-011-1-11
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: CRU_101 RUQ_1627

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._CRU_101

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 4 > FP
 Dapeng Zhang, 2016

2._CRU_101

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 3 > FP
 Dapeng Zhang, 2016

3._CRU_101

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 2 > FP
 Dapeng Zhang, 2016

4._CRU_101

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 1 > FP
 Dapeng Zhang, 2016

5._CRU_101

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5417 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._PA_121_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._CRU_101

identical
22 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D91
 Dapeng Zhang, 2016

8._CRU_101 GC-05-164-4-17

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._PA_121_[PER] GC-05-011-1-11

96.5 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484