SNP Profiles matching CRU 100

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 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCAACCGGGGAACC
1._RUQ_1334
TTCCCCGGCCGGAACCAGCCGGGGAACC
2._POUND_2_/A
__CCGGCC_AACCAACC__AA_
3._POUND_2_/A
__CCGGCC_AACCAACC__AA_
4._POUND_2_/A
__CCGGCC_AACCAACC__AA_
5._POUND_2_/A
__CCGGCC_AACCAACC__AA_
6._POUND_2_/A
__CCGGCC_AACCAACC__AA_
7._POUND_2_/A
__CCGGCC_AACCAACC__AA_
8._POUND_2_/A
__CCGGCC_AA_AACC__AA_
9._POUND_25_/A
__CCGGCC_AA_AACC__AA_
10._RUQ_897
TTCCCCGGCCGGAACCAACCGGGGAACC
11._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
12._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
13._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
14._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
15._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
16._GC-01-093-5-10
TTCCCCGGCCGGAACCAACCGGGGAACC
17._RUQ_801
TTCCCCGGCCGGAACCAACCGGGGAACC
18._RUQ_1504
TTCCCCGGCCGGAACCAACCGGGGAACC
19._RUQ_1587
TTCCCCGGCCGGAACCAACCGGGGAACC
20._RUQ_468
TTCCCCGGCCGGAACCAACCGGGGAACC
21._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
22._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
23._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
24._GC-01-101-5-18
TTCCCCGGCCGGAACCAACCGGGGAACC
25._NA_286
__CCGGCC_AACCAACC__AA_
26._NA_286
__CCGGCC_AACCAACC__AA_
27._NA_286
__CCGGCC_AACCAACC__AA_
28._MARPER_16
__CCGGCC_AA-GGCC__AA_
29._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
30._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
31._GC-08-165-4-08
TTCCCCGGCCGGAACCAGCCGGGGAACC
32._GC-08-165-4-08
TT_CCGGCCGGAACCAGCCGGGGAACC
33._RUQ_1238
TTCCCCGGCCGGAACGAGCCGGGGAACC
34._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
35._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
36._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
37._POUND_5_/C
__CCGGCC_AACCAGCC__AA_
38._NA_95
__ACGTCC_AACCAACC__AA_
39._POUND_5_/C
__CCGGCC_AA_AGCC__AA_
40._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
41._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
42._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
43._GC-05-169-4-22
TTCCCCGGCCGGAACGAGCCGGGGAACC
44._RUQ_1651
TTCCACGGCTGGAA-AACCGGGGAACC
45._RUQ_691
TTCCACGGCTGGACCGAACTGGGGAACC
 1516171819202122232425262728
_Input profile
AACCGGGGAACCCCTTGGGGTTCCCGCC
1._RUQ_1334
AACCGGGGAACCCCTTGGGGTTCCCGCC
2._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
3._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
4._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
5._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
6._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
7._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
8._POUND_2_/A
AACCGGGGAA_CC_GG___GG_
9._POUND_25_/A
AACCGGGGAA_CC_GG___GG_
10._RUQ_897
AACCGGGGAACCCCTTGGGGTTCCGGCC
11._GC-01-093-5-10
AACCGGGGAACCCCCCGGGGTTCCGGCC
12._GC-01-093-5-10
AACCGGGGAACCCCCCGGGGTTCCGGCC
13._GC-01-093-5-10
AACCGGGGAACCCCCCGGGGTTCCGGCC
14._GC-01-093-5-10
AACCGGGGAACCCCCCGGGGTTCCGGCC
15._GC-01-093-5-10
AACCGGGGAACCCCCCGGGGTTCCGGCC
16._GC-01-093-5-10
AACCGGGGAACCCCCCGGGGTTCCGGCC
17._RUQ_801
AACCGGGGAACCCCTTGGGGTTCCGGCC
18._RUQ_1504
AACCGGGGAACCCCTTGGGGTTACGGCC
19._RUQ_1587
AACCGGGGAACCCCTTGGGGTTCCGGCC
20._RUQ_468
AACCGGGGAACCCCTTGGGGTTCCGGCC
21._RUQ_515
AACCGGGGAACCCCTTGGGGTTCCGGCC
22._RUQ_1588
AACCGGGGAACCCCTTGGGGTTACGGCC
23._GC-01-101-5-18
AACCGGGGAACCCCCCGGGGTTCCGGCC
24._GC-01-101-5-18
AACCGGGGAACCCCCCGGGGTTCCGGCC
25._NA_286
AACCGGGGAA_CC_GG___GG_
26._NA_286
AACCGGGGAA_CC_GG___GG_
27._NA_286
AACCGGGGAA_CC_GG___GG_
28._MARPER_16
AACCGGGGAA_CC_GG___CCCC
29._GC-08-165-4-08
AACCGGGGAACCCCCCGGGGTTCCGGCC
30._GC-08-165-4-08
AACCGGGGAACCCCCCGGGGTTCCGGCC
31._GC-08-165-4-08
AACCGGGGAACCCCCCGGGGTTCCGGCC
32._GC-08-165-4-08
AACCGGGGAACCCCCCGGGGTTCCGGCC
33._RUQ_1238
AACCGGGGACCCCCTTGGAGTTCCCGCC
34._POUND_5_/C
AACCGGGGAA_CC_GG___GG_
35._POUND_5_/C
AACCGGGGAA_CC_GG___GG_
36._POUND_5_/C
AACCGGGGAA_CC_GG___GG_
37._POUND_5_/C
AACCGGGGAA_CC_GG___GG_
38._NA_95
AACCGGGGAA_CC_GG___CG_
39._POUND_5_/C
AACCGGGGAA_CC_GG___GG_
40._GC-05-169-4-22
AACCGGGGACCCCCCTGGAGTTCCCGCC
41._GC-05-169-4-22
AACCGGGGACCCCCCTGGAGTTCCCGCC
42._GC-05-169-4-22
AACCGGGGACCCCCCTGGAGTTCCCGCC
43._GC-05-169-4-22
AACCGGGGACCCCCCTGGAGTTCCCGCC
44._RUQ_1651
AACCGT-AACC-TT-GGTTCCCG-
45._RUQ_691
AACCGGGGAACCCCTTGGGGTTCCCGCC
 2930313233343536373839404142
_Input profile
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
1._RUQ_1334
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
2._POUND_2_/A
CC_GG_CC___TT__TTCCAA
3._POUND_2_/A
CC_GG_CC___TT__TTCCAA
4._POUND_2_/A
CC_GG_CC___TT__TTCCAA
5._POUND_2_/A
CC_GG_CC___TT__TTCCAA
6._POUND_2_/A
CC_GG_CC___TT__TTCCAA
7._POUND_2_/A
CC_GG_CC___TT__TTCCAA
8._POUND_2_/A
CC_GG_CC___TT__TTCCAA
9._POUND_25_/A
CC_GG_CC___TT__TTCCAA
10._RUQ_897
CC-GGCCCCGGGGTTTTTTCCTTCGAA
11._GC-01-093-5-10
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
12._GC-01-093-5-10
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
13._GC-01-093-5-10
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
14._GC-01-093-5-10
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
15._GC-01-093-5-10
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
16._GC-01-093-5-10
CCGGGGCCCCGGGGTTTTTTCCTTCCAA
17._RUQ_801
CCGGGGCCCCGGGGTTTTTTCCTTGGAA
18._RUQ_1504
CC-AGCCCCGGGGTTTTTTCCTTCCAA
19._RUQ_1587
CC-GGCCCCGGGGTTTTTTCCTTGGAA
20._RUQ_468
CC-GGCCCCGGGGTTTTTTCCTTGGAA
21._RUQ_515
CC-AGCCCCGGGGTTTTTTCCTTCGAA
22._RUQ_1588
CC-AGCCCCGGGGTTTTTTCCTTCGAA
23._GC-01-101-5-18
CCGGGGCCCCGGGGTTTTTTCCTTGGAA
24._GC-01-101-5-18
CCGGGGCCCCGGGGTT_TTCCTTGGAA
25._NA_286
CC_GG_CC___TT__TTGGAA
26._NA_286
CC_GG_CC___TT__TTGGAA
27._NA_286
CC_GG_CC______TTGGAA
28._MARPER_16
CC_GG_CC___TT__TTCC-
29._GC-08-165-4-08
CCGGGGCCCCGGGGTTTTTTCCTTGGAA
30._GC-08-165-4-08
CCGGGGCCCCGGGGTTTTTTCCTTGGAA
31._GC-08-165-4-08
CCGGGGCCCCGGGGTTTTTTCCTTGGAA
32._GC-08-165-4-08
CCGGGGCCCCGGGGTTTTTTCCTTGGAA
33._RUQ_1238
CCGGAGCCCCGGGGTTGTTTCCTTCCAG
34._POUND_5_/C
CC_GG_CC___TT__TTGGAA
35._POUND_5_/C
CC_GG_CC___TT__TTGGAA
36._POUND_5_/C
CC_GG_CC___TT__TTGGAA
37._POUND_5_/C
CC_GG_CC___TT__TTGGAA
38._NA_95
CT_AG_CC___TT__TTCCAA
39._POUND_5_/C
CC_GG_CC___TT__TTGGAA
40._GC-05-169-4-22
CCGGAGCCCCGGGGTTGTTTCCTTCCAG
41._GC-05-169-4-22
CCGGAGCCCCGGGGTTGTTTCCTTCCAG
42._GC-05-169-4-22
CCGGAGCCCCGGGGTTGTTTCCTTCCAG
43._GC-05-169-4-22
CCGGAGCCCCGGGGTTGTTTCCTTCCAG
44._RUQ_1651
TT--CCCTGGGG-TT-CCTT--
45._RUQ_691
CC-AGCCCCGGGGTTGTTTCCTTCGAA

Input profile: CRU_100 RUQ_877

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._NA_916 RUQ_1334

98.8 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._POUND_2_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._POUND_2_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 2
 Dapeng Zhang, 2016

4._POUND_2_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 11
 Dapeng Zhang, 2016

5._POUND_2_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 4 > FP
 Dapeng Zhang, 2016

6._POUND_2_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 7 > FP
 Dapeng Zhang, 2016

7._POUND_2_/A

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1510 9 > FP
 Dapeng Zhang, 2016

8._POUND_2_/A

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A75 T3
 Dapeng Zhang, 2016

9._POUND_25_/A

97.7 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F406 T5
 Dapeng Zhang, 2016

10._CRU_70 RUQ_897

97.6 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._POUND_2_/A GC-01-093-5-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._POUND_2_/A GC-01-093-5-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._POUND_2_/A GC-01-093-5-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._POUND_2_/A GC-01-093-5-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

15._POUND_2_/A GC-01-093-5-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

16._POUND_2_/A GC-01-093-5-10

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

17._NA_149 RUQ_801

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._NA_232 RUQ_1504

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._NA_702 RUQ_1587

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._NA_756 RUQ_468

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_27 RUQ_515

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._NA_710 RUQ_1588

95.1 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._NA_286 GC-01-101-5-18

94 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

24._NA_286 GC-01-101-5-18

93.9 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

25._NA_286

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

26._NA_286

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

27._NA_286

93.2 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._MARPER_16

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 750A
 Dapeng Zhang, 2014

29._POUND_5_/C GC-08-165-4-08

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

30._POUND_5_/C GC-08-165-4-08

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

31._POUND_5_/C GC-08-165-4-08

92.9 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

32._POUND_5_/C GC-08-165-4-08

92.7 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

33._NA_670 RUQ_1238

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

34._POUND_5_/C

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

35._POUND_5_/C

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 5
 Dapeng Zhang, 2016

36._POUND_5_/C

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 6
 Dapeng Zhang, 2016

37._POUND_5_/C

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8408 11
 Dapeng Zhang, 2016

38._NA_95

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

39._POUND_5_/C

90.9 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B A77 T10
 Dapeng Zhang, 2016

40._NA_670 GC-05-169-4-22

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

41._NA_670 GC-05-169-4-22

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

42._NA_670 GC-05-169-4-22

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

43._NA_670 GC-05-169-4-22

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

44._GEBP_450_/A-F_[ADI] RUQ_1651

90.3 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

45._SPA_16_[COL] RUQ_691

90.2 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP560 18TcSNP577 19TcSNP591 20TcSNP602
21TcSNP619 22TcSNP702 23TcSNP723 24TcSNP731 25TcSNP799
26TcSNP823 27TcSNP872 28TcSNP878 29TcSNP891 30TcSNP899
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484