SNP Profiles matching SPA 16 [COL]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGACCGAACTGGGGAACC
1._SPA_9_[COL]
____ACGGCT__ACCGAACT____AA__
2._MATINA_2_/8
____ACGGCT__AC__AACT____AA__
3._GC-01-111-6-08
TTCCACGGCTGGAACGAGCTGGGGAACC
4._GC-01-111-6-08
TTCCACGG__GGAACGAGCTGGGGAACC
5._NA_45
____ACGGCT__AACGAGCT____AA__
6._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
7._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
8._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
9._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
10._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
11._GC-01-111-6-08
TTCCACGGCCGGAACGAGCTGGGGAACC
12._NA_45
____ACGG____AACGAGCT____AA__
13._RUQ_515
TTCCCCGGCCGGAACCAGCCGGGGAACC
14._RUQ_1230
TTCCACGGCTGGAACGAGCTGGGGATCC
15._RUQ_1577
TTCCCCGGCCGGACCGAGCTGGGGAACC
16._RUQ_1588
TTCCCCGGCCGGAACCAACCGGGGAACC
17._RUQ_877
TTCCCCGGCCGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCTTGGGGAACCCCTTGGGGTTCCCG
1._SPA_9_[COL]
AACCTTGGGGAA__CC__GG______CG
2._MATINA_2_/8
AACCTTGGGGAA__CC__________CG
3._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
4._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
5._NA_45
AACCTTGTGGAA__CC__GG______CG
6._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
7._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
8._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
9._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
10._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
11._GC-01-111-6-08
AACCTTGTGGAACCCCCCGGGGTTCCCG
12._NA_45
AACCTTGTGGAA__CC__GG______CG
13._RUQ_515
AACCTTGGGGAACCCCTTGGGGTTCCGG
14._RUQ_1230
AACCCTGGGGACCCCCTTGGGGTTCCCC
15._RUQ_1577
AACCCTGGGGAACCCTTTGGAGTTCCCG
16._RUQ_1588
AACCTTGGGGAACCCCTTGGGGTTACGG
17._RUQ_877
AACC__GGGGAACCCCTTGGGGTTCCCG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTGTTTCCTTCGAA
1._SPA_9_[COL]
__CCAG__CC______GT____TTCGAA
2._MATINA_2_/8
CCCCAG__CC______GT____TTCGAA
3._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
4._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
5._NA_45
__CCAG__CC______TT____TTCGAA
6._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
7._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
8._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
9._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
10._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
11._GC-01-111-6-08
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
12._NA_45
__CCAG__CC______TT____TTCGAA
13._RUQ_515
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
14._RUQ_1230
CCCCAGCCCTGGGGTTTTTTCCTTCGAA
15._RUQ_1577
CCCCAGCCCCGGAGTTGTTTCCTTCCAA
16._RUQ_1588
CCCCAGCCCCGGGGTTTTTTCCTTCGAA
17._RUQ_877
CCCCGGCCCCGGGGTTTTTTCCTTCCAA

Input profile: SPA_16_[COL] RUQ_691

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._SPA_9_[COL]

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 2 X1 Y17
 Dapeng Zhang, 2016

2._MATINA_2_/8

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B106 T16
 Dapeng Zhang, 2014

3._NA_45 GC-01-111-6-08

92.9 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._NA_45 GC-01-111-6-08

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

5._NA_45

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

6._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

9._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._NA_45 GC-01-111-6-08

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

12._NA_45

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

13._IMC_27 RUQ_515

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._NA_26 RUQ_1230

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._NA_33 RUQ_1577

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._NA_710 RUQ_1588

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._CRU_100 RUQ_877

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484