SNP Profiles matching POUND 7/B [POU]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCTGGAACCAACTAGGGAACC
1._RUQ_6
TTCCACGGCTGGAACCAACTAGGGAACC
2._RUQ_1534
TTCCACGGCTGGAACCAACTAGGGAACC
3._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
4._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
5._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
6._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
7._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
8._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
9._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
10._EET_272_[ECU]
____ACGGCT__AACCAACT____AA__
11._POUND_7_/B
____ACGGCT__AACCAACT____AA__
12._POUND_7_/B
____ACGGCT__AACCAACT____AA__
13._POUND_7_/B
____ACGGCT__AACCAACT____AA__
14._POUND_7_/B
____ACGGCT__AACCAACT____AA__
15._POUND_7_/B
____ACGGCT__AACCAACT____AA__
16._POUND_7_/B
____ACGGCT__AACCAACT____AA__
17._POUND_7_/B
____ACGGCT__AACCAACT____AA__
18._POUND_7_/B
____ACGGCT__AACCAACT____AA__
19._PA_150_[PER]
____ACGGCT__AACCAACT____AA__
20._POUND_7_/B
____ACGGCT__AACCAACT____AA__
21._RUQ_24
____ACGGCT__AACCAACT____AA__
22._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
23._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
24._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
25._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
26._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
27._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
28._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
29._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
30._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
31._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
32._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
33._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
34._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
35._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
36._GC-01-114-6-11
TTCCACGGCTGGAACCAACTAGGGAACC
37._RUQ_1231
TTCCACGGCCGGAACCAACTAGGGAACC
38._GC-03-032-3-11
TTCCACGGCTGGAACCAACTAGGGAACC
39._RUQ_1651
TTCCACGGCTGGAA__AACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGTGGAACCCTTTGGGGTTACCC
1._RUQ_6
AACCCTGTGGAACCCTTTGGGGTTACCC
2._RUQ_1534
AACCCTGTGGAACCCTTTGGGGTTACCC
3._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
4._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
5._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
6._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
7._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
8._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
9._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
10._EET_272_[ECU]
AACCCTGTGGAA__CT__GG______CC
11._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
12._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
13._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
14._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
15._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
16._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
17._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
18._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
19._PA_150_[PER]
AACCCTGTGGAA__CT__GG______CC
20._POUND_7_/B
AACCCTGTGGAA__CT__GG______CC
21._RUQ_24
AACCCTGTGGAA__CT__GG______CC
22._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
23._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
24._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
25._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
26._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
27._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
28._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
29._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
30._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
31._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
32._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
33._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
34._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
35._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
36._GC-01-114-6-11
AACCCTGTGGAACCCTCCGGGGTTACCC
37._RUQ_1231
AACCCCGTGGAACCCTTTGGGGTTACCC
38._GC-03-032-3-11
AACCCTGTGGAACCCTCCGGGGTTACCC
39._RUQ_1651
AACCTTGT__AACC__TT__GGTTCCCG
 29303132333435363738394041 
_Input profile
CCAGCCCTGGGGTTTTTTCCTTCCAAX_X
1._RUQ_6
CCAG__CTGGGGTTTTTTCCTTCCAAX_X
2._RUQ_1534
CCAG__CTGGGGTTTTTTCCTTCCAAX_X
3._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
4._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
5._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
6._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
7._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
8._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
9._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
10._EET_272_[ECU]
__AG__CT______TT____TTCCAAX_X
11._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
12._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
13._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
14._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
15._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
16._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
17._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
18._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
19._PA_150_[PER]
__AG__CT______TT____TTCCAAX_X
20._POUND_7_/B
__AG__CT______TT____TTCCAAX_X
21._RUQ_24
__AG__CT______TT____TTCCAGX_X
22._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
23._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
24._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
25._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
26._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
27._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
28._GC-03-032-3-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
29._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
30._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
31._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
32._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
33._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
34._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
35._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
36._GC-01-114-6-11
CCAGCTCTGGGGTTTTTTCCTTCCAAX_X
37._RUQ_1231
CCAGCCCCGGGGTTTTTTCCTTCCAAX_X
38._GC-03-032-3-11
CCAGCTCTGGGGTTTT__CCTTCCAAX_X
39._RUQ_1651
____CCCTGGGG__TT__CCTT____X_X

Input profile: POUND_7_/B RUQ_24

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU] RUQ_6

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._TRD_32 RUQ_1534

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

4._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

5._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

6._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

7._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

8._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

17._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

18._POUND_7_/B

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

19._PA_150_[PER]

identical
23 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

20._POUND_7_/B

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

21._POUND_7_/B RUQ_24

97.8 %
23 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

24._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

25._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

26._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

27._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._EET_272_[ECU] GC-03-032-3-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

29._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

31._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

32._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

33._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

34._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

35._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

36._POUND_7_/B GC-01-114-6-11

96.3 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

37._LZ_8 RUQ_1231

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

38._EET_272_[ECU] GC-03-032-3-11

96.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

39._GEBP_450_/A-F_[ADI] RUQ_1651

91.9 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP998
31TcSNP999 32TcSNP1060 33TcSNP1063 34TcSNP1111 35TcSNP1126
36TcSNP1253 37TcSNP1309 38TcSNP1439 39TcSNP1442 40TcSNP1458
41TcSNP1484