SNP Profiles matching POUND 10 /B

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 Key

 1234567891011121314
_Input profile
TTCCAAGGCCGGAACCGGCCGGGGAACC
1._EET_400_[ECU]
____AAGGCC__AACCGGCC____AA__
2._EET_400_[ECU]
____AAGGCC__AACCGGCC____AA__
3._EET_400_[ECU]
____AAGGCC__AACCGGCC____AA__
4._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
5._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
6._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
7._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
8._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
9._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
10._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
11._POUND_10
____AAGGCC__AACCGGCC____AA__
12._POUND_10_/B
____AAGGCC__AACCGGCC____AA__
13._EET_400_[ECU]
____AAGG____AACCGGCC____AA__
14._EET_400_[ECU]
____AAGGCT__AACCGGCC____AA__
15._RUQ_1618
____AAGGCC__AACCGGCC____AA__
16._GC-01-066-4-02
TTCCAAGGCCGGAACCGGCCGGGGAACC
17._GC-01-066-4-02
TTCCAAGGCCGGAACCGGCCGGGGAACC
18._GC-01-066-4-02
TTCCAAGGCCGGAACCGGCCGGGGAACC
19._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
20._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
21._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
22._GC-01-115-6-12
TTCCAAGGCCGGAACCGGCCGGGGAACC
23._GC-08-162-4-05
TTCCAAGGCCGGAACCGGCCGGGGAACC
24._GC-01-066-4-02
TTCCAAGG__GGAACCGGCCGGGGAACC
25._GC-08-163-4-06
TTCCAAGGCCGGAACCGGCCGGGGAACC
26._GC-08-163-4-06
TTCCAAGGCCGGAACCGGCCGGGGAACC
27._GC-01-066-4-02
TTCCAAGGCTGGAACCGGCCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCCTTGGAACCCCTTGGGGTTCCCG
1._EET_400_[ECU]
AACCCCTTGGAA__CC__GG______CG
2._EET_400_[ECU]
AACCCCTTGGAA__CC__GG______CG
3._EET_400_[ECU]
AACCCCTTGGAA__CC__GG______CG
4._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
5._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
6._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
7._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
8._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
9._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
10._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
11._POUND_10
AACCCCTTGGAA__CC__GG______CG
12._POUND_10_/B
AACCCCTTGGAA__CC__GG______CG
13._EET_400_[ECU]
AACCCCTTGGAA__CC__GG______CG
14._EET_400_[ECU]
AACCCCTTGGAA__CC__GG______CG
15._RUQ_1618
AACCCCTTGGAA__CC__GG______CG
16._GC-01-066-4-02
AACCCCTTGGAACCCCCCGGGGTTCCCG
17._GC-01-066-4-02
AACCCCTTGGAACCCCCCGGGGTTCCCG
18._GC-01-066-4-02
AACCCCTTGGAACCCCCCGGGGTTCCCG
19._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
20._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
21._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
22._GC-01-115-6-12
AACCCCTTGGAACCCCCCGGGGTTCCCG
23._GC-08-162-4-05
AACCCCTTGGAACCCCCCGGGGTTCCCG
24._GC-01-066-4-02
AACCCCTTGGAACCCCCCGGGGTTCCCG
25._GC-08-163-4-06
AACCCCTTGGAACCCCCCGGGGTTCCCG
26._GC-08-163-4-06
AACCCCTTGGAACCCCCCGGGG__CCCG
27._GC-01-066-4-02
AACCCCTTGGAACCCCCCGGGGTTCCCG
 2930313233343536373839404142
_Input profile
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
1._EET_400_[ECU]
__TTGG__CC______TT____TTGGAA
2._EET_400_[ECU]
__TTGG__CC______TT____TTGGAA
3._EET_400_[ECU]
__TTGG__CC______TT____TTGGAA
4._POUND_10_/B
__TTGG__CC______TT____TTGGAA
5._POUND_10_/B
__TTGG__CC______TT____TTGGAA
6._POUND_10_/B
__TTGG__CC______TT____TTGGAA
7._POUND_10_/B
__TTGG__CC______TT____TTGGAA
8._POUND_10_/B
__TTGG__CC______TT____TTGGAA
9._POUND_10_/B
__TTGG__CC______TT____TTGGAA
10._POUND_10_/B
__TTGG__CC______TT____TTGGAA
11._POUND_10
__TTGG__CC______TT____TTGGAA
12._POUND_10_/B
__TTGG__CC______TT____TTGGAA
13._EET_400_[ECU]
__TTGG__CC______TT____TTGGAA
14._EET_400_[ECU]
__TTGG__CC______TT____TTGGAA
15._RUQ_1618
__TTGG__CC______TT____TTGGAG
16._GC-01-066-4-02
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
17._GC-01-066-4-02
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
18._GC-01-066-4-02
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
19._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
20._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
21._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
22._GC-01-115-6-12
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
23._GC-08-162-4-05
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
24._GC-01-066-4-02
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
25._GC-08-163-4-06
CCTTGG__CCGGGGTTTTTTCCTTGGAA
26._GC-08-163-4-06
CCTTGGCCCCGGGGTTTTTTCCTTGGAA
27._GC-01-066-4-02
CCTTGGCCCCGGGGTTTTTTCCTTGGAA

Input profile: POUND_10_/B RUQ_1618

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_400_[ECU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

2._EET_400_[ECU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

3._EET_400_[ECU]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 1 > FP
 Dapeng Zhang, 2016

6._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 11 > F
 Dapeng Zhang, 2016

7._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1612 3 > FP
 Dapeng Zhang, 2016

8._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8405 7
 Dapeng Zhang, 2016

9._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 2
 Dapeng Zhang, 2016

10._POUND_10_/B

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8406 10
 Dapeng Zhang, 2016

11._POUND_10

identical
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P11 1146
 Dapeng Zhang, 2016

12._POUND_10_/B

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F429 T13
 Dapeng Zhang, 2016

13._EET_400_[ECU]

identical
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

14._EET_400_[ECU]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

15._POUND_10_/B RUQ_1618

97.9 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._EET_400_[ECU] GC-01-066-4-02

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._EET_400_[ECU] GC-01-066-4-02

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._EET_400_[ECU] GC-01-066-4-02

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

20._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

21._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

22._POUND_10_/B GC-01-115-6-12

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

23._POUND_10_/B GC-08-162-4-05

97.6 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

24._EET_400_[ECU] GC-01-066-4-02

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

25._POUND_10_/B GC-08-163-4-06

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._POUND_10_/B GC-08-163-4-06

97.6 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

27._EET_400_[ECU] GC-01-066-4-02

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484