SNP Profiles matching PA 7 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCAAGGCTGGACCCAGCCGGGGAACC
1._RUQ_113
____AAGGCT__ACCCAGCC____AA__
2._PA_7_[PER]
____AAGGCT__ACCCAGCC____AA__
3._PA_7_[PER]
____AAGGCT__ACCCAGCC____AA__
4._PA_7_[PER]
____AAGGCT__ACCCAGCC____AA__
5._PA_7_[PER]
____AAGGCT__AACCAGCC____AA__
6._PA_7_[PER]
____AAGGCT__AACCAGCC____AA__
7._PA_7_[PER]
____AAGGCT__AACCAGCC____AA__
8._PA_7_[PER]
____AAGGCT__AACCAGCC____AA__
9._PA_7_[PER]
____AAGGCT__AACCAGCC____AA__
10._GC-04-030-2-12
TTCCAAGGCTGGAACCAGCCGGGGAACC
11._GC-04-030-2-12
TTCCAAGGCTGGAACCAGCCGGGGAACC
12._GC-04-030-2-12
TTCCAAGGCTGGAACCAGCCGGGGAACC
13._GC-04-030-2-12
TTCCAAGGCTGGAACCAGCCGGGGAACC
14._GC-04-030-2-12
TTCCAAGGCTGGAACCAGCCGGGGAACC
15._PA_200_[PER]
____ACGTCT__AC__AGCC____AA__
 1516171819202122232425262728
_Input profile
AAAACCGTGGCCCCTTCCGGAGTTAAGG
1._RUQ_113
AAAACCGTGGCC__TT__GG______GG
2._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
3._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
4._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
5._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
6._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
7._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
8._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
9._PA_7_[PER]
AAAACCGTGGCC__TT__GG______GG
10._GC-04-030-2-12
AAAACCGTGGCCCCTTCCGGAGTTAAGG
11._GC-04-030-2-12
AAAACCGTGGCCCCTTCCGGAGTTAAGG
12._GC-04-030-2-12
AAAACCGTGGCCCCTTCCGGAGTTAAGG
13._GC-04-030-2-12
AAAACCGTGGCCCCTTCCGGAGTTAAGG
14._GC-04-030-2-12
AAAACCGTGGCCCCTTCCGGAGTTAAGG
15._PA_200_[PER]
AAAACCGTCGCC__CT__________GG
 2930313233343536373839404142
_Input profile
CCCCGGAGCCCCGGGGTTTTCTCCCTCG
1._RUQ_113
__CC__AG__CC______TT____CTCG
2._PA_7_[PER]
__CC__AG__CC______TT____CTCG
3._PA_7_[PER]
__CC__AG__CC______TT____CTCG
4._PA_7_[PER]
__CC__AG__CC______TT____CTCG
5._PA_7_[PER]
__CC__AG__CC______TT____CTCG
6._PA_7_[PER]
__CC__AG__CC______TT____CTCG
7._PA_7_[PER]
__CC__AG__CC______TT____CTCG
8._PA_7_[PER]
__CC__AG__CC______TT____CTCG
9._PA_7_[PER]
__CC__AG__CC______TT____CTCG
10._GC-04-030-2-12
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
11._GC-04-030-2-12
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
12._GC-04-030-2-12
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
13._GC-04-030-2-12
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
14._GC-04-030-2-12
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
15._PA_200_[PER]
CCCC__AG__CC______TT____CTCG
 43             
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_113
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_7_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GC-04-030-2-12
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GC-04-030-2-12
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GC-04-030-2-12
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-04-030-2-12
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-04-030-2-12
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_200_[PER]
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_7_[PER] RUQ_113

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_7_[PER] RUQ_113

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_7_[PER]

identical
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

3._PA_7_[PER]

identical
24 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

4._PA_7_[PER]

identical
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

5._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

8._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

12._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

14._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._PA_200_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 710
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484