SNP Profiles matching PA7 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCAAGGCTGGACCCAGCCGGGGAACC
1._PA_7_[PER]___
____AAGGCT__ACCCAGCC____AA__
2._PA_7_[PER]___
____AAGGCT__ACCCAGCC____AA__
3._PA_7_[PER]___
____AAGGCT__ACCCAGCC____AA__
4._PA_7_[PER]___
____AAGGCT__ACCCAGCC____AA__
5._PA_7_[PER]___
____AAGGCT__AACCAGCC____AA__
6._PA_7_[PER]___
____AAGGCT__AACCAGCC____AA__
7._PA_7_[PER]___
____AAGGCT__AACCAGCC____AA__
8._PA_7_[PER]___
____AAGGCT__AACCAGCC____AA__
9._PA_7_[PER]___
____AAGGCT__AACCAGCC____AA__
10._PA_7_[PER]___
TTCCAAGGCTGGAACCAGCCGGGGAACC
11._PA_7_[PER]___
TTCCAAGGCTGGAACCAGCCGGGGAACC
12._PA_7_[PER]___
TTCCAAGGCTGGAACCAGCCGGGGAACC
13._PA_7_[PER]___
TTCCAAGGCTGGAACCAGCCGGGGAACC
14._PA_7_[PER]___
TTCCAAGGCTGGAACCAGCCGGGGAACC
15._PA_200_[PER]___
____ACGTCT__AC__AGCC____AA__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAACCGTGGCCCCTTCCGGAGTTAAGG
1._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
2._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
3._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
4._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
5._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
6._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
7._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
8._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
9._PA_7_[PER]___
AAAACCGTGGCC__TT__GG______GG
10._PA_7_[PER]___
AAAACCGTGGCCCCTTCCGGAGTTAAGG
11._PA_7_[PER]___
AAAACCGTGGCCCCTTCCGGAGTTAAGG
12._PA_7_[PER]___
AAAACCGTGGCCCCTTCCGGAGTTAAGG
13._PA_7_[PER]___
AAAACCGTGGCCCCTTCCGGAGTTAAGG
14._PA_7_[PER]___
AAAACCGTGGCCCCTTCCGGAGTTAAGG
15._PA_200_[PER]___
AAAACCGTCGCC__CT__________GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCGGAGCCCCGGGGTTTTCTCCCTCG
1._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
2._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
3._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
4._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
5._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
6._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
7._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
8._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
9._PA_7_[PER]___
__CC__AG__CC______TT____CTCG
10._PA_7_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
11._PA_7_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
12._PA_7_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
13._PA_7_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
14._PA_7_[PER]___
CCCCGGAGCCCCGGGGTTTTTTCCCTCG
15._PA_200_[PER]___
CCCC__AG__CC______TT____CTCG
 43              
_Input profile
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._PA_7_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._PA_200_[PER]___
AGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_7_[PER] RUQ_113

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_7_[PER] RUQ_113

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_7_[PER]

identical
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

3._PA_7_[PER]

identical
24 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

4._PA_7_[PER]

identical
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

5._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016

6._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

8._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

97.9 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

12._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

13._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

14._PA_7_[PER] GC-04-030-2-12

97.7 %
43 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._PA_200_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 710
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484