SNP Profiles matching PA 39 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._RUQ_1131
TTCCACGGCCGGAACCAACCGGGGAACC
2._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
3._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
4._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
5._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
6._RUQ_1531
____ACGGCC__AACCAACC____AA__
7._PA_156_[PER]
____ACGGCC__AACCAACC____AA__
8._PA_186_[PER]
____ACGGCC__AACCAACC____AA__
9._PA_156_[PER]
____ACGG____AACCAACC____AA__
10._PA_156_[PER]
____ACGGCC__AA__AACC____AA__
11._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
12._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
13._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
14._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
15._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
16._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
17._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
18._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
19._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
20._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
21._PA_105_[PER]
____AAGGCT__AA__AACC____AA__
22._RUQ_1531
TTCCACGGCCGGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTTTCGACCTTTCCGGAGTTAAGG
1._RUQ_1131
AACCTTGTCCACCTTTCCGGGGTTAAGG
2._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
3._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
4._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
5._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
6._RUQ_1531
AAACCCTTCGCC__TT__GG______GG
7._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
8._PA_186_[PER]
AAACCCTTCGCC__TT__________GG
9._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
10._PA_156_[PER]
AAACCCTTCGCC__TT__GG______GG
11._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
12._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
13._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
15._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
16._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
19._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
20._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
21._PA_105_[PER]
AACCCTTTCGCC__TT__________GG
22._RUQ_1531
AAACCCTTCGCCTTTTCTGGGGTTACGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTCTCTCTGGAG
1._RUQ_1131
CCCCAACCCCGGGGTTTTCTCTCTGGAG
2._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
3._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
4._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
5._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
6._RUQ_1531
__CCAG__CC______TT____CTGGAG
7._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
8._PA_186_[PER]
CCCCAG__CC______TT____CTGGAG
9._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
10._PA_156_[PER]
__CCAG__CC______TT____CTGGAG
11._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
12._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
13._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
14._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
15._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
16._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
17._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
18._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
19._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
20._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT__CCCTGGAG
21._PA_105_[PER]
CCCCAG__CC______TT____CTGGGG
22._RUQ_1531
CCCCAG__CCGGGGTTTTTTCTCTGGAG

Input profile: PA_39_[PER] RUQ_1567

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_136_[PER] RUQ_1131

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

6._PA_156_[PER] RUQ_1531

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._PA_156_[PER]

93.8 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

8._PA_186_[PER]

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

9._PA_156_[PER]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._PA_156_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

11._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

21._PA_105_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A F526 T1
 Dapeng Zhang, 2014

22._PA_156_[PER] RUQ_1531

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484