SNP Profiles matching PA 72 [PER]

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCACGGCCGGAACCAACCGGGGAACC
1._PA_136_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
2._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
3._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
4._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
5._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
6._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
7._PA_156_[PER]___
____ACGGCC__AACCAACC____AA__
8._PA_186_[PER]___
____ACGGCC__AACCAACC____AA__
9._PA_156_[PER]___
____ACGG____AACCAACC____AA__
10._PA_156_[PER]___
____ACGGCC__AA__AACC____AA__
11._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
12._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
13._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
14._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
15._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
16._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
17._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
18._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
19._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
20._PA_72_[PER]___
TTCCACGTCCGGAACCAGCCGGGGAACC
21._PA_105_[PER]___
____AAGGCT__AA__AACC____AA__
22._PA_156_[PER]___
TTCCACGGCCGGAACCAACCGGGGAACC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCCTTTCGACCTTTCCGGAGTTAAGG
1._PA_136_[PER]___
AACCTTGTCCACCTTTCCGGGGTTAAGG
2._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
3._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
4._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
5._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
6._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
7._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
8._PA_186_[PER]___
AAACCCTTCGCC__TT__________GG
9._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
10._PA_156_[PER]___
AAACCCTTCGCC__TT__GG______GG
11._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
12._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
13._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
14._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
15._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
16._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
17._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
18._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
19._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
20._PA_72_[PER]___
AAACCTGTCGCCTTTTCCGGAGTTAAGG
21._PA_105_[PER]___
AACCCTTTCGCC__TT__________GG
22._PA_156_[PER]___
AAACCCTTCGCCTTTTCTGGGGTTACGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAGCCCCGGGGTTTTCTCTCTGGAG
1._PA_136_[PER]___
CCCCAACCCCGGGGTTTTCTCTCTGGAG
2._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
3._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
4._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
5._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
6._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
7._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
8._PA_186_[PER]___
CCCCAG__CC______TT____CTGGAG
9._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
10._PA_156_[PER]___
__CCAG__CC______TT____CTGGAG
11._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
12._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
13._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
14._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
15._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
16._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
17._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
18._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
19._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
20._PA_72_[PER]___
CCCCAGCCCCGGGGTTTT__CCCTGGAG
21._PA_105_[PER]___
CCCCAG__CC______TT____CTGGGG
22._PA_156_[PER]___
CCCCAG__CCGGGGTTTTTTCTCTGGAG

Input profile: PA_39_[PER] RUQ_1567

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_136_[PER] RUQ_1131

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

3._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

4._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

5._PA_156_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

6._PA_156_[PER] RUQ_1531

93.8 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._PA_156_[PER]

93.8 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

8._PA_186_[PER]

93.8 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 446
 Dapeng Zhang, 2014

9._PA_156_[PER]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

10._PA_156_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

11._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

12._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

13._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

15._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

17._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

18._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

19._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_72_[PER] GC-08-051-1-62

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._PA_105_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A F526 T1
 Dapeng Zhang, 2014

22._PA_156_[PER] RUQ_1531

90.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484