SNP Profiles matching PA 30 [PER]

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 Key

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_Input profile
TTCCACGGCCGGACCCGGCCGGGGAACC
1._PA_150_[PER]
____ACGGCC__AACCGGCC____AA__
2._PA_150_[PER]
____ACGGCC__AACCGGCC____AA__
3._PA_150_[PER]
____ACGGCC__AACCGGCC____AA__
4._PA_150_[PER]
____ACGGCC__AA__GGCC____AA__
5._RUQ_1569
TTCCACGGCCGGAACCAGCCGGGGAACC
6._RUQ_1564
TTCCACGGCCGGAACCAGCCGGGGAACC
 1516171819202122232425262728
_Input profile
AGACCTTTCCCCTTTTCTGGGGTTAAGG
1._PA_150_[PER]
AGACCTTTCGAC__TT__GG______GG
2._PA_150_[PER]
AGACCTTTCGAC__TT__GG______GG
3._PA_150_[PER]
AGACCTTTCGAC__TT__GG______GG
4._PA_150_[PER]
AGACCTTTCGAC__TT__GG______GG
5._RUQ_1569
AAACCTGTCGCCTTTTCTGGGGTTAAGG
6._RUQ_1564
AAACCTGTCGCCTTTTCTGGGGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTCTCCCCGGAG
1._PA_150_[PER]
__CCAG__CC______TT____CCGGAG
2._PA_150_[PER]
__CCAG__CC______TT____CCGGAG
3._PA_150_[PER]
__CCAG__CC______TT____CCGGAG
4._PA_150_[PER]
__CCAG__CC______TT____CCGGAG
5._RUQ_1569
CCCCAGCCCCGGGGTTTTCTCTCCCGAG
6._RUQ_1564
CCCCAGCCCCGGGGTTTTCTCTCCCGAG

Input profile: PA_30_[PER] RUQ_1635

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_150_[PER]

91.7 %
24 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

2._PA_150_[PER]

91.7 %
24 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

3._PA_150_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

4._PA_150_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

5._CRUZ_7_/14 RUQ_1569

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_71_[PER] RUQ_1564

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484