SNP Profiles matching PA 299 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGAACCGGCCGGGGAACC
1._RUQ_37
TTCCCCGGCCGGAACCGGCCGGGGAACC
2._RUQ_952
TTCCACGTCTGGAACCGGCCGGGGAACC
3._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
4._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
5._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
6._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
7._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
8._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
9._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
10._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
11._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
12._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
13._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
14._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
15._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
16._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
17._RUQ_1569
TTCCACGGCCGGAACCAGCCGGGGAACC
18._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
19._RUQ_1564
TTCCACGGCCGGAACCAGCCGGGGAACC
20._PA_56_[PER]
__CCGGCC_AACCAGCC____
21._PA_46_[PER]
__ACGGCC_AA-GGCC__AA_
22._RUQ_1059
TTCCACGTCCGGAACCAACCGGGGAACC
23._GC-05-011-1-11
TTCCACGTCCGGAACCAACCGGGGAACC
24._GC-05-011-1-11
TTCCACGTCCGGAACCAACCGGGGAACC
25._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
26._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
27._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
28._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
29._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
30._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
31._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
32._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
33._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
34._GC-08-051-1-62
TTCCACGTCCGGAACCAGCCGGGGAACC
35._GC-05-011-1-11
TTCCACGT_GGAACCAACCGGGGAACC
 1516171819202122232425262728
_Input profile
AAACCTGGCGCCTTTTCTGGAGTTAAGG
1._RUQ_37
AAACCTGTCGACTTTTCTGGAGTTAAGG
2._RUQ_952
AAAACTGGCGCCTTTTCCGGAGTTAAGG
3._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
4._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
5._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
6._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
7._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
8._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
9._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
10._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
11._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
12._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
13._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
14._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
15._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
16._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
17._RUQ_1569
AAACCTGTCGCCTTTTCTGGGGTTAAGG
18._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
19._RUQ_1564
AAACCTGTCGCCTTTTCTGGGGTTAAGG
20._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
21._PA_46_[PER]
AAAACTGGCGAC_TT_-___GG
22._RUQ_1059
AGAACTGGCGCCTTTTCCGGAGTTAAGG
23._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
24._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
25._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
26._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
27._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
28._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
29._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
30._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
31._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
32._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
33._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
34._GC-08-051-1-62
AAACCTGTCGCCTTTTCCGGAGTTAAGG
35._GC-05-011-1-11
AGAACTGGCGCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTCCCTCTCCGG
1._RUQ_37
CCCCAACCCCGGGGTTTTCTCTCTCGGG
2._RUQ_952
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
3._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
4._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
5._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
6._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
7._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
8._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
9._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
10._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
11._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
12._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
13._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
14._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
15._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
16._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
17._RUQ_1569
CCCCAGCCCCGGGGTTTTCTCTCCCGAG
18._RUQ_32
CCCCAGCCCCGGGGTTTTCTCCCTCGGG
19._RUQ_1564
CCCCAGCCCCGGGGTTTTCTCTCCCGAG
20._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
21._PA_46_[PER]
CCCCAG_CC___TT__CTGGGG
22._RUQ_1059
CCCCAGCCCCGGGGTTTTCCCTCTGGGG
23._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
24._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG
25._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
26._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
27._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
28._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
29._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
30._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
31._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
32._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
33._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
34._GC-08-051-1-62
CCCCAGCCCCGGGGTTTT_CCCTGGAG
35._GC-05-011-1-11
CCCCAGCCCCGGGGTTTT_CTCTGGGG

Input profile: PA_299_[PER] RUQ_1621

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_175_[PER] RUQ_37

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_289_[PER] RUQ_952

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

4._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

5._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

6._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

7._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

8._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

9._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

10._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

11._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

12._PA_137_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

14._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

15._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

16._PA_56_[PER]

91.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

17._CRUZ_7_/14 RUQ_1569

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._PA_56_[PER] RUQ_32

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_71_[PER] RUQ_1564

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._PA_56_[PER]

91.3 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._PA_46_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 235
 Dapeng Zhang, 2014

22._PA_121_[PER] RUQ_1059

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._PA_121_[PER] GC-05-011-1-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._PA_121_[PER] GC-05-011-1-11

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

26._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

27._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

29._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

31._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

32._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

33._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

34._PA_72_[PER] GC-08-051-1-62

90.2 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

35._PA_121_[PER] GC-05-011-1-11

90 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484