SNP Profiles matching PA 195 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCACGGCCGGCCCCGGCCGGGGAACC
1._RUQ_1576
TTCCACGGCCGGCCCCGGCCGGGGAACC
2._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
3._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
4._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
5._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
6._PA_195_[PER]
____ACGGCC__CCCCGGCC____AA__
7._RUQ_1642
____ACGGCC__CCCCGGCC____AA__
8._RUQ_1642
____ACGGCC__CCCCGGCC____AA__
9._PA_195_[PER]
____ACGGCC__CC__GGCC____AA__
10._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
11._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
12._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
13._GC-05-166-4-19
TTCCACGGCCGGCCCCGGCCGGGGAACC
14._PA_115_[PER]
____ACGGCC__AC__GGCC____AA__
15._PA_165_[PER]
____ACGGCC__AC__GGCC____AA__
16._GC-03-032-3-11
TTCCCCGGCCGG__CCAGCCGGGGAACC
17._PA_187_[PER]
____ACGGCC__CCCCGGCC____AA__
18._GC-07-077-4-21
TTCCCCGGCCGGCCCCAGCCGGGGAACC
19._PA_189_[PER]
____ACGGCC__CC__GGCC____AA__
20._GC-08-275-8-47
TTCCACGTCCGG__CCAACCGGGGAACC
21._GC-08-275-8-47
TTCCACGTCCGG__CCAACCGGGGAACC
22._GC-08-275-8-47
TTCCACGTCCGG__CCAACCGGGGAACC
23._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
24._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
25._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
26._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
27._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._RUQ_1436
TTCCCCGGCCGGACCCAGCCGGGGAACC
29._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
 1516171819202122232425262728
_Input profile
AAAACCGGCGCCTTTTCTGGAGTTAAGG
1._RUQ_1576
AAAACCGGCGCCTTTTCTGGAGTTAAGG
2._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
3._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
4._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
5._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
6._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
7._RUQ_1642
AAAACCGGCGCC__TT__GG______GG
8._RUQ_1642
AAAACCGGCGCC__TT__GG______GG
9._PA_195_[PER]
AAAACCGGCGCC__TT__GG______GG
10._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
11._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
12._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
13._GC-05-166-4-19
AAAACCGGCGCCTTTTCTGGAGTTAAGG
14._PA_115_[PER]
AAAACCGGGGCC__TT__________GG
15._PA_165_[PER]
AAACCCGGCGCC__TT__________GG
16._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
17._PA_187_[PER]
AGAACCGTCCCC__TT__________GG
18._GC-07-077-4-21
AAACCCGTCGCCCCTTCTGGAGTTAAGG
19._PA_189_[PER]
AGAACCGTCCCC__TT__________GG
20._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
21._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
22._GC-08-275-8-47
AAAACCGTGGACTTTTCTGGAGTTAAGG
23._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
24._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
25._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
26._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
27._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
28._RUQ_1436
AAACCCGTCGCCCTTTTTGGAGTTAAGG
29._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
1._RUQ_1576
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
2._RUQ_1642
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
3._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
4._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
5._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
6._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
7._RUQ_1642
__CCAG__CC______TT____CCCGGG
8._RUQ_1642
__CCAG__CC______TT____CCCGGG
9._PA_195_[PER]
__CCAG__CC______TT____CCCGGG
10._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
11._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
12._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
13._GC-05-166-4-19
CCCCAGCTCCGGGGTTTTTTCCCCCGGG
14._PA_115_[PER]
CCCCGG__CC______TT____CCCGGG
15._PA_165_[PER]
CCCCAG__CC______TT____CCCGAG
16._GC-03-032-3-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
17._PA_187_[PER]
CCCCAG__CC______TT____CTCGGG
18._GC-07-077-4-21
CCCC__CCCCGGGGTTTTTTCCCCGGGG
19._PA_189_[PER]
CCCCAG__CC______TT____CTCGGG
20._GC-08-275-8-47
CCCCAGCCCCGGAGTTTT__CCCCCGGG
21._GC-08-275-8-47
CCCCAGCCCCGGAGTTTT__CCCCCGGG
22._GC-08-275-8-47
__CCAGCCCCGGAGTTTT__CCCCCGGG
23._GC-03-032-3-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
24._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
25._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
26._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
27._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
28._RUQ_1436
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
29._RUQ_32
CCCCAGCCCCGGGGTTTTCTCCCTCGGG

Input profile: PA_195_[PER] RUQ_1642

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_124_[PER] RUQ_1576

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_195_[PER] RUQ_1642

identical
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

5._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

6._PA_195_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

7._PA_195_[PER] RUQ_1642

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._PA_195_[PER] RUQ_1642

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_195_[PER]

identical
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

10._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

12._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._PA_195_[PER] GC-05-166-4-19

98.8 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

14._PA_115_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 324
 Dapeng Zhang, 2014

15._PA_165_[PER]

93.5 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 714
 Dapeng Zhang, 2014

16._EET_272_[ECU] GC-03-032-3-11

92.7 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

17._PA_187_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 737
 Dapeng Zhang, 2014

18._EQX_/O_[CHA] GC-07-077-4-21

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._PA_189_[PER]

91.3 %
23 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 489
 Dapeng Zhang, 2014

20._IMC_41 GC-08-275-8-47

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._IMC_41 GC-08-275-8-47

91.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._IMC_41 GC-08-275-8-47

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._EET_272_[ECU] GC-03-032-3-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._PA_150_[PER] GC-01-034-2-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

25._PA_150_[PER] GC-01-034-2-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

26._PA_150_[PER] GC-01-034-2-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

27._PA_150_[PER] GC-01-034-2-11

90.5 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

28._MOQ_6_/95 RUQ_1436

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._PA_56_[PER] RUQ_32

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484