SNP Profiles matching PA 175 [PER]

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGAACCGGCCGGGGAACC
1._PA_175_[PER]
__CCGGCC_AACCGGCC__AA_
2._PA_175_[PER]
__CCGGCC_AACCGGCC__AA_
3._PA_175_[PER]
__CCGGCC_AACCGGCC__AA_
4._PA_175_[PER]
__CCGGCC_AACCGGCC__AA_
5._RUQ_37
__CCGGCC_AACCGGCC__AA_
6._PA_175_[PER]
__CCGGCC_AACCGGCC__AA_
7._PA_175_[PER]
__CCGGCC_AACCGGCC__AA_
8._NA
TTCCCCGGCCGGAACCGGCCGGGGAACC
9._NA
TTCCCCGGCCGGAACCGGCCGGGGAACC
10._NA
TTCCCCGGCCGGAACCGGCCGGGGAACC
11._NA
TTCCCCGGCCGGAACCGGCCGGGGAACC
12._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
13._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
14._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
15._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
16._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
17._PA_56_[PER]
__CCGGCC_AACCAGCC____
18._RUQ_1621
TTCCACGGCCGGAACCGGCCGGGGAACC
19._RUQ_32
__CCGGCC_ACCCAGCC__AA_
20._PA_293_[PER]
__ACGTCC_AACCGGCC__AA_
21._PA_293_[PER]
__ACGTCC_AACCGGCC__AA_
22._PA_56_[PER]
__CCGGCC_ACCCAGCC__AA_
23._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
24._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
25._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
26._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
27._RUQ_1569
TTCCACGGCCGGAACCAGCCGGGGAACC
28._RUQ_1564
TTCCACGGCCGGAACCAGCCGGGGAACC
29._NA
TTCCCCGGCCGGAACCAGCCGGGG_CC
 1516171819202122232425262728
_Input profile
AAACCTGTCGACTTTTCTGGAGTTAAGG
1._PA_175_[PER]
AAACCTGTCGAC_TT_GG___GG
2._PA_175_[PER]
AAACCTGTCGAC_TT_GG___GG
3._PA_175_[PER]
AAACCTGTCGAC_TT_GG___GG
4._PA_175_[PER]
AAACCTGTCGAC_TT_GG___GG
5._RUQ_37
AAACCTGTCGAC_TT_GG___GG
6._PA_175_[PER]
AAACCTGTCGAC_TT_-___GG
7._PA_175_[PER]
AAACCTGTCGAC_TT_GG___GG
8._NA
AAACCTGTCGACTTTTCCGGAGTTAAGG
9._NA
AAACCTGTCGACTTTTCCGGAGTTAAGG
10._NA
AAACCTGTCGACTTTTCCGGAGTTAAGG
11._NA
AAACCTGTCGACTTTTCCGGAGTTAAGG
12._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
13._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
14._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
15._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
16._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
17._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
18._RUQ_1621
AAACCTGGCGCCTTTTCTGGAGTTAAGG
19._RUQ_32
AAACCTGTCGCC_TT_GG___GG
20._PA_293_[PER]
AAAACTGTCGAC_TT_-___GG
21._PA_293_[PER]
AAAACTGTCGAC_TT_-___GG
22._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
23._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
24._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
25._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
26._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
27._RUQ_1569
AAACCTGTCGCCTTTTCTGGGGTTAAGG
28._RUQ_1564
AAACCTGTCGCCTTTTCTGGGGTTAAGG
29._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAACCCCGGGGTTTTCTCTCTCGGG
1._PA_175_[PER]
_CCAA_CC___TT__CTCGGG
2._PA_175_[PER]
_CCAA_CC___TT__CTCGGG
3._PA_175_[PER]
_CCAA_CC___TT__CTCGGG
4._PA_175_[PER]
_CCAA_CC___TT__CTCGGG
5._RUQ_37
_CCAA_CC___TT__CTCGGG
6._PA_175_[PER]
CCCCAA_CC___TT__CTCGGG
7._PA_175_[PER]
_CCAA_CC___TT__CTCGGG
8._NA
CCCCAACTCCGGGGTTTTTTCTCTCGGG
9._NA
CCCCAACTCCGGGGTTTTTTCTCTCGGG
10._NA
CCCCAACTCCGGGGTTTTTTCTCTCGGG
11._NA
CCCCAACTCCGGGGTTTTTTCTCTCGGG
12._RUQ_32
CCCCAGCCCCGGGGTTTTCTCCCTCGGG
13._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
14._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
15._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
16._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
17._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
18._RUQ_1621
CCCCAGCCCCGGGGTTTTCCCTCTCCGG
19._RUQ_32
_CCAG_CC___TT__CTCGGG
20._PA_293_[PER]
CCCCAG_CC___TT__CTCGGG
21._PA_293_[PER]
CCCCAG_CC___TT__CTCGGG
22._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
23._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
24._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
25._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
26._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
27._RUQ_1569
CCCCAGCCCCGGGGTTTTCTCTCCCGAG
28._RUQ_1564
CCCCAGCCCCGGGGTTTTCTCTCCCGAG
29._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG

Input profile: PA_175_[PER] RUQ_37

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_175_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_175_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 8
 Dapeng Zhang, 2016

3._PA_175_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 9
 Dapeng Zhang, 2016

4._PA_175_[PER]

identical
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8127 12
 Dapeng Zhang, 2016

5._PA_175_[PER] RUQ_37

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_175_[PER]

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F473 T6
 Dapeng Zhang, 2014

7._PA_175_[PER]

identical
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 738
 Dapeng Zhang, 2016

8._PA_175_[PER] NA

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._PA_175_[PER] NA

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_175_[PER] NA

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._PA_175_[PER] NA

96.4 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._PA_56_[PER] RUQ_32

94 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._PA_56_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

14._PA_56_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

15._PA_56_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

16._PA_56_[PER]

93.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

17._PA_56_[PER]

93.5 %
23 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._PA_299_[PER] RUQ_1621

92.9 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_56_[PER] RUQ_32

91.7 %
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._PA_293_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER C 817
 Dapeng Zhang, 2014

21._PA_293_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 762
 Dapeng Zhang, 2014

22._PA_56_[PER]

91.7 %
24 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

23._PA_56_[PER] NA

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

24._PA_56_[PER] NA

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._PA_56_[PER] NA

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

26._PA_56_[PER] NA

91.7 %
42 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

27._CRUZ_7_/14 RUQ_1569

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._PA_71_[PER] RUQ_1564

91.7 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._PA_56_[PER] NA

91.5 %
41 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484